1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agcccgcaacaacaatactatcttagactctgttgtgcaacatgtgaagcactagattttaatacattagaacgcactacctaattatatattttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
species | Zea mays |
transcript | GRMZM2G038848_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|31354246|gb|CD438603.1|CD438603
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|148943028|gb|EC888078.2|EC888078
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCEST: gi|148946776|gb|EC892045.2|EC892045
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATT-ATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGC
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|89757643|gb|DY687157.1|DY687157
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|148942779|gb|EC887806.2|EC887806
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|71429367|gb|DR810417.1|DR810417
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|91878697|gb|EB408654.1|EB408654
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCCAG GAAATTATCAAAAGCTTACCCCCCGACACCTTAAAGATTGTTGATCTCTCEST: gi|148946555|gb|EC884293.2|EC884293
genomic: TTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCC-AGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCC--GACAC-TTAAAGATTGTTGATCTCTC
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|78080160|gb|DV508572.1|DV508572
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCGGTTTTT-GCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|78079274|gb|DV507686.1|DV507686
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|74234671|gb|DT642585.1|DT642585
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCGEST: gi|149074521|gb|EE162917.2|EE162917
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
gaagcactagattttaatacattagaacgcactacctaattatatattttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
acctaat putative branch site (score: 70)
tattttttc putative PPT
actacctaattatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcccgcaacaacaatactatcttagactctgttgtgcaacatgtgaagcactagattttaatacattagaacgcactacctaattatatattttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
-gcccgca
- - - - -caacaat
- - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - - - - - gcactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactacc