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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcccgcaacaacaatactatcttagactctgttgtgcaacatgtgaagcactagattttaatacattagaacgcactacctaattatatattttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878697|gb|EB408654.1|EB408654
EST:     TTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCCAG                         GAAATTATCAAAAGCTTACCCCCCGACACCTTAAAGATTGTTGATCTCTC
genomic: TTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCC-AGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCC--GACAC-TTAAAGATTGTTGATCTCTC
EST: gi|71448245|gb|DR829295.1|DR829295
EST:     TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG                         GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: gi|148946555|gb|EC884293.2|EC884293
EST:     TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG                         GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
EST: gi|148942779|gb|EC887806.2|EC887806
EST:     TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAG                         GAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
genomic: TTTCAGATGTTGATGCTGTTTTTTGCTGCTTGCCACATGGTACAACCCAGgtttgtttat ... attttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagcactagattttaatacattagaacgcactacctaattatatattttttcagGAAATTATCAAAAGCTTACCCCGACACTTAAAGATTGTTGATCTCTCAGCG
                                 acctaat  putative branch site (score: 3)
                                            tattttttc  putative PPT
                              actacctaattatata  TA-rich tract