1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acagctttagctgaatacaaaccatctgcagctatgctgaatacatgtttatcttaattttcaggctgcatgttcatcttgtcatgtgcatttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATGATATGATCGACACAGCAG
species | Zea mays |
transcript | GRMZM2G038791_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|211126323|gb|FL371824.1|FL371824
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|60338563|gb|DN205536.1|DN205536
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|91052223|gb|EB162641.1|EB162641
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGTTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|71429936|gb|DR810986.1|DR810986
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGAEST: gi|74243299|gb|DT651213.1|DT651213
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGA
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|78085035|gb|DV513428.1|DV513428
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|60350838|gb|DN217811.1|DN217811
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|71429935|gb|DR810985.1|DR810985
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|76011084|gb|DT938254.1|DT938254
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|93016209|gb|EB641729.1|EB641729
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: AATGTCGCTGAG GGGAGGAATTTTATTGGAGACGGGAGAGGAAAAGTGGCTGTTTTGATGGATEST: gi|86468618|gb|DY234988.1|DY234988
genomic: AATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|78544258|gb|DV621756.1|DV621756
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|110204864|gb|EC886761.1|EC886761
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|60398185|gb|DN231001.1|DN231001
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|78125653|gb|DV544037.1|DV544037
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATEST: gi|26457160|gb|CA828743.1|CA828743
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
EST: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAG GTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
genomic: CACCTCTAGCTATTGTAGATAAAAGAAGGCAAGGACATAATGTCGCTGAGgcaagtattc ... tttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGAT
tgtttatcttaattttcaggctgcatgttcatcttgtcatgtgcatttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATGATATGATCGACACAGCAG
tcttaat putative branch site (score: 3)
atcttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagctttagctgaatacaaaccatctgcagctatgctgaatacatgtttatcttaattttcaggctgcatgttcatcttgtcatgtgcatttattacagGTGATGAATCTTATTGGAGACGTGAGAGGAAAAGTGGCTGTTATGATGGATGATATGATCGACACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA