1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcttatttgaagtttaaaatatacagtgtgctacattatttaaaacaacagttgtgacatgagttgtttattacctgatcatatctgtagaaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAAATTTCAGTAAATCAAGGGACTGCTACACTATTGCCAGTTGAAGGAAACT
species | Zea mays |
transcript | GRMZM2G038667_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATAGAAAGA-CCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAG GTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAAEST: gi|160481641|gb|EY254473.1|EY254473
genomic: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAGgtacctcttc ... aaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAA
EST: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAG GTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAAEST: gi|6056664|gb|AW091069.1|AW091069
genomic: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAGgtacctcttc ... aaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAA
EST: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAG GTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAA
genomic: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAGgtacctcttc ... aaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAA
caacagttgtgacatgagttgtttattacctgatcatatctgtagaaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAAATTTCAGTAAATCAAGGGACTGCTACACTATTGCCAGTTGAAGGAAACT
acctgat putative branch site (score: 4)
ttgtttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttatttgaagtttaaaatatacagtgtgctacattatttaaaacaacagttgtgacatgagttgtttattacctgatcatatctgtagaaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAAATTTCAGTAAATCAAGGGACTGCTACACTATTGCCAGTTGAAGGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA