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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccatcggctattcggcttcatttagatcattaaattttgtgcatatgctttctcaaaattacttatgtgattcatgtattactgttatcgtcatctttatgcattattttcaactgcaagaattatatttatctatcttatcctcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGGTGATCTTGGAC

Basic information

species Zea mays
transcript GRMZM2G038667_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038667_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 3'ss of exon 3
gtaagtccatcggctattcggcttcatttagatcattaaattttgtgcatatgctttctcaaaattacttatgtga--ttcatgtattactgttatcgtcatctttatgcattattttcaactgcaagaattatatttatctatcttatcctcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGGTGATCTTGGAC
                                                          || |  |   | | |  |  || ||| |||  | || || | | || || |  |  ||||   |||  ||   ||  ||| | | | || |||  || | ||||| |||||||||||||  |||| |||  |||| |   ||||     | |||||| |  |||| |||||||| |||||||||||||||  |||||||||||
-------------------------------------------------------cattctacttctatcaggccatctttatgcatttattttttcttgagctctaagtttctttttt--ctg-gagctctaagttt-tgtgtattgtcc--atgttcagGCCTTTCTGGAGCAAAGACTTGAGGAGCTTGAGACAGTGGAAGATATAAATCATCTAATTTTCACTGATTCTGATATAGCAGTGGTTACTGATCTTGGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481641|gb|EY254473.1|EY254473
EST:     GAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATT                         GCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAAT
genomic: GAAACTATTCTCGAGGAAATTTGATGCTTCAGAGAATAAAGACATACATTgtaagtccat ... tcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcattattttcaactgcaagaattatatttatctatcttatcctcatatccagGCATTTCTGGAGCAAAAGCTTGTGGAATTTGATAGGATGGAGAGGTTGAATCATTTTGTTTTAACTGATTCCGATATAGCAGTGGTTGGTGATCTTGGAC
                                 tctatcttatcctc  CT-rich tract
                   aagaattatatttatc  TA-rich tract