Sequence
atgc intronic sequence ATGC exonic sequence...gttttgacattcttattgctctcttgtgatgtcgtttatcacagaaaggcaaggacgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 5
------------------------------gttttgacattcttat-tgctctcttgtgatgtcgtttatcacaga------aaggcaaggacgatgcataatgaacgtctatgatttataatggt---atgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
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gtaagaaaagacagctttacatgaactttcatttctgcatgcttccgcatttatttctgaagtcttcagatgaaaatttgccaacagagagaagttgcgaaagtagtatttcagtttttttttgttttcataaccttcagGTTGGGAGTATTCAACTGATGGAAAATGTGAGAAAATGCCATCCACAAAGATGCTCAACGTGCGCATCCGGTCATTACCATGCTTTGAGCAAGAAGGAAT
upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 5
------gttttgacattcttattgctctcttgtgatgtcgtttatcacagaaaggcaaggacgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
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caaagaattactctttttttaaagtcttcccatgatcataatgttcccaataaagt---ggtagtgca--agtaatatttctgatttcctttt-catacccttcagGGTGGGAGTATTCAACTGATGGAAAATGTGAGAAAATGCCAGCCACGAAGTTGCTCAATGTGCGCATCCGGTCATTGCCATGCTTTGAGCAAGAAGGCAT
upper sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------gttttgacattcttattgct-----ctcttgtgatgtcgtttatca---cagaaaggcaaggacgatgcataatgaacgtctatgattt-ataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
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gttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatgg-atgaacttcagGGTGGGAGTACTCAACAGATGGGAAATGCGAGAAAATGCCGTCAACACGATTGCTTAATGTAAAAATAAAATCATTGCCGTGTTTAGAGCAAGAGGGAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaggcaaggacgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
tgttcttc CT-rich tract
tctatgatttataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttgacattcttattgctctcttgtgatgtcgtttatcacagaaaggcaaggacgatgcataatgaacgtctatgatttataatggtatgttcttcagGTTGGGAGTACTCTACTGATGGGAAATGTGAAAAAATGCCATCAACAAAGATGCTCAACGTGCGCATCCAGTCATTGCCATGCTTTGAGCAGGAAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA