Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgctccttgcattagttattggttattgacctgacaatgtaaaattaggtaacctttttttcctcaccctgaatgctcctcgcattatgtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA

Basic information

species Zea mays
transcript GRMZM2G038126_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 5
aatgctccttgcattagttattggttattgacctgacaatgtaaaattaggtaacctttttttcct----caccctgaa--tgctcctcgcattatgtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
  | |||  ||| | || | ||| | | | |    | | |||||   |   ||  |  |||  | |        |||||  |  |  |    || ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| || |
tttactctctgc-tcagcttttgctcaataa----atactgtaagcatttatattcgctttcccttgtgctgttctgaaattcattgtgatgttctgttttt-cagATTGCTGCTATCTGTCAAGAAGCTGGTATGCATGCTGTGCGCAAAAATCGGTATGTTATCCTCCCCAAGGACTTCGAGAAGGGTTACCGAACCAATGTCA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G31450.1 (Glycine max), 3'ss of exon 5
aatgctccttgcattagttattggttattgacctgac-aatgtaaaattaggtaacctttttttcctcaccctgaatgctcctcgcattatgtt-tttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
|  | |   ||   ||  ||      |       | | ||||| ||  ||  |    | | | |   ||   | | |  |    | ||  || |   | |||||  | ||||| |||||||||||||| ||||||||||| ||||| ||  |||||||||| || ||||||||||| |||||||| ||| | || |||||||
agaggtagctgtgataaataagaaagacgattaagtctaatgtcaa--taaatgtgatatatataaacagttttattatttgatgaatgttggtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGATATGTCATACTGCCCAAGGACTTCGAGAAGGGTTACAGGACAAACGTGA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G31470.1 (Glycine max), 3'ss of exon 5
aatgctccttgcattagttattggttattgacctgacaatgtaaaattaggtaacctttttttcctcaccctgaatgctcctcgcattat-----gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
  || |   |  ||   | || |   |||| | |  |  |  |    |  ||||  | | | |    |  | |  |  || |   || ||     ||   | |||||  | ||||| |||||||||||||| ||||||||||| ||||| ||  |||||||||| || || |||||||| |||||||| ||  | || |||||||
--tg-tgaatatatgcctgatagaagattgccatctc--tacaggtctttgtaatatatatatatataaacagttttatcatttgatgattgttggtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGATATGTCATACTGCCAAAGGACTTCGAGAAGGGTTATAGGACAAACGTGA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G05730.1 (Glycine max), 3'ss of exon 5
aatgctccttgcattagttattggttattgacctgacaatgtaaaattaggtaacctt--tttttcctcaccctgaatgctcctcgcattat--gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
|||          | | | | || | ||  |  |    || |||||  ||||     |  | | |   ||   | | |  |    | ||| |  ||   | ||||| || || || |||||||||||||| ||||||||||| ||||| ||  |||||||||| || || |||||||| |||||||| ||| | || |||||||
aataagttaaatgtcaataaatg-tgat--atatatatatataaaaacaggtctttgtaatatataaacagttttattatttggtg-attgttggtgcctgcagATAGCAGCCATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGATATGTCATACTGCCGAAGGACTTCGAGAAGGGTTACAGGACAAACGTGA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g08220.t01 (Vitis vinifera), 3'ss of exon 5
aatgctccttgcattagttattggttattgacctgacaatgtaaaattaggtaacctttttttcctcaccctgaatgctcctcgcat----tatgtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
||    |   | |    | || ||||    |  |       | |  | |  ||| |   |||  |      ||| || |  |  ||     | |   | | |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| ||||
aaccagcggagaaactctgataggttcccaaggttttt-cattatttcaaataaacgaatttctcatg---tgagtgtttttaacacaatctgtacgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGATATGTAATTCTCCCCAAGGACTTTGAGAAGGGTTATCGAACCAATGTGA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: PP1S243_67V6.1 (Physcomitrella patens), 3'ss of exon 5
aatgctccttgcattagttattggt--tattgacctgacaatgtaa-aattaggtaacctttttttcctcaccctgaatgctcctcgcattatgtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
 ||| |   | ||   || | |  |  ||||          ||||  |  | | |     | |  | |  | |    ||| |       | |||      |||||| |||| |||||||| || ||||| |||||||| ||| | || || || ||||| ||  | |||||||| ||||||||||||||| || ||||||| |
tatgttgagttcagctgtaaattatagtattaggtcaggtctgtattagctggatttgtatgtgctgcatatctgatatgattgatttgtcatgac---gcagATTTCTGCCATCTGTCAGGAGGCTGGTATGCATGCAGTCAGAAAGAATCGTTATGTGATTTTGCCCAAGGATTTTGAGAAGGGCTACAGATCCAACGTCA

upper sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 5
lower sequence: EFJ04233 (Selaginella moellendorffii), 3'ss of exon 5
aatgctccttgcattagttattggttattgacctgacaatgtaaaattaggtaacctttttttcctcaccctgaatgctcctcgcattatgtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
                                               |||  | || ||| |      |  |          ||||||   ||| | ||||||||||| || |||||||| || ||||||||||| ||  | || || || || || || || |||||||||||||||||||||||| | ||||||||||
----------------------------------------------gtagagagccgtttgtcttgggctttac---tctgacgcatttcctttatccagATTGCTGCGATATGTCAAGAGGCAGGCATGCATGCGGTGAGGAAGAATCGCTACGTTATTCTTCCCAAGGACTTTGAGAAGGGCTACAGGACCAACGTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32916779|gb|CF021591.1|CF021591
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|67017682|gb|CO446431.1|CO446431
EST:     TTGATTTGGAAGACTATGTTTNCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAACTGGCATGCATGCTGTNNCGCAAAA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTC-CGCAAAA
EST: gi|32803133|gb|CD955369.1|CD955369
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGTTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32836399|gb|CD976077.1|CD976077
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|4321029|gb|AI467692.1|AI467692
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|4646635|gb|AI491464.2|AI491464
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|33092922|gb|CF052916.1|CF052916
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|4966643|gb|AI691499.1|AI691499
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32835304|gb|CD974982.1|CD974982
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60398034|gb|DN230850.1|DN230850
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5608000|gb|AI901667.1|AI901667
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32908277|gb|CF013090.1|CF013090
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|78112286|gb|DV530680.1|DV530680
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6194636|gb|AW146740.1|AW146740
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAANCTGGCATGCATGCTGGCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6022227|gb|AW067155.1|AW067155
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32837433|gb|CD977111.1|CD977111
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|211059235|gb|FL016222.1|FL016222
EST:     GATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: GATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|22490303|gb|BU050226.1|BU050226
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|4314880|gb|AI444677.2|AI444677
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6695790|gb|AW288898.1|AW288898
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32850236|gb|CD989917.1|CD989917
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5005873|gb|AI711935.1|AI711935
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32837757|gb|CD977435.1|CD977435
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5081176|gb|AI738333.1|AI738333
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|60355468|gb|DN222441.1|DN222441
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|148947210|gb|EC892558.2|EC892558
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|149051875|gb|EE156005.2|EE156005
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|4804079|gb|AI665945.1|AI665945
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|89246893|gb|DY618679.1|DY618679
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32835786|gb|CD975464.1|CD975464
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|5361046|gb|AI795661.1|AI795661
EST:     TTGATTTGGAAGACTATGTTTCCAGGCCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32912925|gb|CF017737.1|CF017737
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|87153030|gb|DY397819.1|DY397819
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|148931877|gb|EC877341.2|EC877341
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|24769170|gb|CA404299.1|CA404299
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|211249737|gb|FL399213.1|FL399213
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6342662|gb|AW165486.1|AW165486
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|211331026|gb|FL444742.1|FL444742
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|149064642|gb|EE286516.2|EE286516
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|32944662|gb|CF049481.1|CF049481
EST:     AAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: AAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|6601809|gb|AW256250.1|AW256250
EST:     TTGATTTGGAAGACTATGTTTCCAGGCCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGA
EST: gi|18964972|gb|BM661316.1|BM661316
EST:     TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGAT                         ATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCT
genomic: TTGATTTGGAAGACTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctcg ... gtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaggtaacctttttttcctcaccctgaatgctcctcgcattatgtttttacagATTGCTGCTATCTGTCAAGAAGCTGGCATGCATGCTGTCCGCAAAAACCGATATGTCATCCTCCCCAAGGACTTTGAGAAGGGCTACCGAACCAACGTGA
                 tcctcac  putative branch site (score: 2)
                                            tgttttt  putative PPT
                                        attatgtttttaca  TA-rich tract