Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgattattactctatttcattgcagctcaacaatgtttattcacttaactttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 3'ss of exon 5
---------gtgagttcgattattactctat--ttcattgcagctcaaca-atgtttattca--cttaactt---tttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC
          |||  |  || |  | |||||  | |  || ||||||||  || || | | |  ||||| |    |||| ||||| |||||||||||||||||||||||||||||||||||||||||  | |||||| |
gtgagtttactgaagttaataaccattctatgctgccatggagctcaacgtatcttgacttaatcttaattaaaattttccagGTCATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCATTAGGGCAGAC

upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA16G04580.1 (Glycine max), 3'ss of exon 5
------------gtgagttcgat--tattactctatttcattgcagctcaacaatgtttattcactta-actttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC
             |||  |  |   ||| |   ||| |   |   ||||     ||| ||       | | | | |||||||| ||||| |||||||| ||||| ||||||||||| ||||||||  | || ||   
gtgagatatggtttgaactttaccatatcagcatatgttgattt-gctctttgttgtctaaaggaaaacaatatatttcagGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTGTTGGTCAACA

upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT3G03940.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------gtgagttcgattat-tactctatttcattgcagctcaacaatgtttattcacttaactttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC
              ||||     | |   | |    |  ||      ||   ||||   |  || |||   || |||||||| ||||| |||||||| || |||||||||||||| ||||||||  |||  ||  |
gtaagcttttcgtatgagcctagtcacacattgagatgaatcaggtatctttaatgaagaaacatttataattatttcagGTCATGGACATGCTTGGGCCTAGCCTTTGGGATGTTTGGAATTCTTTGGCTCAATC

upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT5G18190.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------gtgagttcgattat---tactct--at-ttcattgcagc-tcaacaatgtttattcacttaactttt-tttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC
               |||| |   |||    |||| |  || || ||||     |||   |    || |    |||  | |  ||||||| ||||| ||||||||||| || || |||||||| ||||||||   ||||||  |
gtatgtaatttacaatgagctttgttaaatatactttcgatattgattgtgttatcatgtacaagtaatgctataatatatacttcagGTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928688|gb|CF033500.1|CF033500
EST:     GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTT                         GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG
genomic: GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTTgtgagttcga ... tttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG
EST: gi|32929679|gb|CF034491.1|CF034491
EST:     GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTT                         GTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG
genomic: GCATACCATCGGTCCACTACAAGGGTCGTCAGGGCGAATACTATATACTTgtgagttcga ... tttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattactctatttcattgcagctcaacaatgtttattcacttaactttttttcagGTAATGGATATGCTTGGTCCCAGCCTTTGGGATGTGTGGAATTCGATGGGGCAGGC
                                      acttaac  putative branch site (score: 3)
                                       cttaactttttttc  CT-rich tract
                               tttattcacttaactt  TA-rich tract