1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagttatatgctcttccgcttctagctttgctaaagtttactgacatgtgttttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
species | Zea mays |
transcript | GRMZM2G037342_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|78119306|gb|DV537690.1|DV537690
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTATCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|32866161|gb|CF005843.1|CF005843
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|20300970|gb|BQ163913.1|BQ163913
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|71426858|gb|DR807908.1|DR807908
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|18964389|gb|BM660977.1|BM660977
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|149058822|gb|EE156843.2|EE156843
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|76912611|gb|DV164818.1|DV164818
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAGEST: gi|149015463|gb|EE045330.2|EE045330
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
EST: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCT TCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
genomic: TTGGCAGTTTCCTTTATCTGTTCGGCTCCAGCACCATTCTTGGAGTAGCTgtaagttata ... ttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
atgctcttccgcttctagctttgctaaagtttactgacatgtgttttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
tactgac putative branch site (score: 1)
tgttttttct putative PPT
taaagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatatgctcttccgcttctagctttgctaaagtttactgacatgtgttttttctgcagTCTGGACTTCTTAGTGCTTATACCATTAAGAAGTTGTACTTCGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT