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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttatcacattttacatttttctatcaagacaacagaaatatccttgcctatcttgtaaagtcttctcaaaataatagtaacacaggtgtgaatttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACCGATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCT

Basic information

species Zea mays
transcript GRMZM2G037200_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037200_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g45480.3 (Oryza sativa), 3'ss of exon 3
--------ttttatcacattttacatttttctatcaagacaacagaaatatccttgcctatcttgtaaagtcttctcaaaataatagtaacaca-ggtgtga-atttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACCGATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCT
        ||  ||   |||  ||||   ||  || | |  |    |||    ||  ||||            | |  ||||| || | ||| | ||  | | ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||| | |||||||||||| ||  | || ||||||||||| |||||||| || |
tgttttctttccattcgattgcacatacgtcgttccataagatgagaatgatgtt--ctattca--------ctttacaaatagtaatgacagaaggcataatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31997696|gb|CD661719.1|CD661719
EST:     TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGA                         GTATGGGGATTTGGC
genomic: TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaag ... tgaatttcagGTATGGG-ATTTGGC
EST: gi|95107946|gb|EB740175.1|EB740175
EST:     TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGA                         GTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC
genomic: TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaag ... tgaatttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC
EST: gi|87157418|gb|DY402207.1|DY402207
EST:     TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGA                         GTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC
genomic: TAGTAGGAGGCATGAGGCTTTATTCTGCTTCAATGGATAAAACTATCAGAgtatgcaaag ... tgaatttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcctatcttgtaaagtcttctcaaaataatagtaacacaggtgtgaatttcagGTATGGGATTTGGCAACTTTGCAGTGCATACAGACTCTTTCTGATCATACCGATGTTGTTATGTCCGTGCTTTGCTGGGATCAATTTCTATTATCTTGCT
                               tagtaac  putative branch site (score: 1)
                      tcaaaataatagtaa  TA-rich tract