1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaccaaagaatgttattgcctgtgcgtttaattgtctgctgagtgctgatgtcttattccaagtactgtggtgttgagtggatttttaactcttgctagGTGAACGTTCGGAGTTTTGGACACAGAAATCCTCTGGAAGAGTACAAGATCGATGGCTGCCGCTTCTTCATCTCAATGTTGAGCGCCACACGACGTCTCA
species | Zea mays |
transcript | GRMZM2G036497_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCCGTGCAAGAGTCCCGTTATGACGATGCATATATAGGTGGAATTGAG GTGAACGTTCGGAGTTTTGGACACAGAAATCCTCTGGAAGAGTACAAGATC
genomic: ATGCCGTGCAAGAGTCCCGTTATGACGATGCTTATATAGGTGGAATTGAGgtttgattct ... ctcttgctagGTGAACGTTCGGAGTTTTGGACACAGAAATCCTCTGGAAGAGTACAAGATC
gctgatgtcttattccaagtactgtggtgttgagtggatttttaactcttgctagGTGAACGTTCGGAGTTTTGGACACAGAAATCCTCTGGAAGAGTACAAGATCGATGGCTGCCGCTTCTTCATCTCAATGTTGAGCGCCACACGACGTCTCA
ttttaac putative branch site (score: 37)
ctcttgct CT-rich tract
atttttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaccaaagaatgttattgcctgtgcgtttaattgtctgctgagtgctgatgtcttattccaagtactgtggtgttgagtggatttttaactcttgctagGTGAACGTTCGGAGTTTTGGACACAGAAATCCTCTGGAAGAGTACAAGATCGATGGCTGCCGCTTCTTCATCTCAATGTTGAGCGCCACACGACGTCTCA
-gaccaaa
- - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg