Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagctccaaaatgatggggtttttaccttttatatagatatgtgatgcatcctagccatggtgttgtaccatcgtctaatgccatcatctttcatgcagAATCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTGACACGGCTGGTAGAGTGTTGGAACTTCTTTTGTTATTGGATATG

Basic information

species Zea mays
transcript GRMZM2G036050_T05
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361140|gb|CD445497.1|CD445497
EST:     TGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTG                         ACTCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTG
genomic: TGCTTTGAACAACCAAGGCTATAGAAAAAAGCAGGATCAAGATTTCATTGgtacattact ... tttcatgcagAATCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcatcctagccatggtgttgtaccatcgtctaatgccatcatctttcatgcagAATCATTAATTAAAGTTCTGGCAACTGGTGGAAGTGTGCTACTTCCTGTTGACACGGCTGGTAGAGTGTTGGAACTTCTTTTGTTATTGGATATG
                             gtctaat  putative branch site (score: 3)
                                        tcatctttc  putative PPT