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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctctatttgtttgcttttttatcttggtagtattccttacttcaaataatgtgtgtttgactgacatgatggtaaaaaacaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTATGGATGTGACTACTCACTAAAG

Basic information

species Zea mays
transcript GRMZM2G035595_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035595_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 3'ss of exon 5
gtgctctatttgttt--gcttttttatc-----ttggtagta----ttccttacttcaaataatgtgtgtttgact-------gaca-------tgatggt--aaaaaacaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTATGGATGTGACTACTCACTAAAG
|||||||| ||||||  | |||||| ||     |||  |  |    | ||| |||||| |  |  ||||||    |       || |       |||||||  |  ||| |  | ||||||||||||||||| || ||   |||||||||||| |||||||||||||| |||||||||||  |||| |||
gtgctctacttgtttatgtttttttgtcaatgcttgacaacagacttgcctgacttcagagtagttgtgttgagtttcatgatgagagtgctattgatggtccagtaaaaatttgcagCCACCTTTTGATACCAAACTTGGGAATACATTTATTATCCACTTCACTTACGGATGTGACTATACACTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5928606|gb|AW056003.1|AW056003
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGA-TTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|211142481|gb|FL118078.1|FL118078
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|71441274|gb|DR822324.1|DR822324
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|4776320|gb|AI665323.1|AI665323
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|211541587|gb|FL476015.1|FL476015
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|211025730|gb|FL435838.1|FL435838
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|211246948|gb|FL479530.1|FL479530
EST:     GGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|78027261|gb|DV495648.1|DV495648
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|71759438|gb|DR957375.1|DR957375
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|86472181|gb|DY238551.1|DY238551
EST:     CGCATTGCATGGAGTTCATCAT-TCCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: CGCATTGCATGGAGTTCATCATAT-CCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|149009585|gb|EE154018.2|EE154018
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|5928615|gb|AW056012.1|AW056012
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGA-TTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|5816276|gb|AI987192.1|AI987192
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGA-TTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|84970100|gb|DV171467.2|DV171467
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
EST: gi|211142480|gb|FL118077.1|FL118077
EST:     GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAG                         CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT
genomic: GCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatt ... acaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttacttcaaataatgtgtgtttgactgacatgatggtaaaaaacaaatacagCCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTATGGATGTGACTACTCACTAAAG
                         gactgac  putative branch site (score: 2)
                                       taaaaaacaaataca  TA-rich tract