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gtatgttccgctatttgtgaccaaggtttccatgaagttatattagtacagggttatgatggtctgattcactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGACATTTACAGCTTTGGAGTCGTTCTCCTTGAAGCAATTACCGGAAGGGAT
species | Zea mays |
transcript | GRMZM2G034855_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGGCGCTGGAAAGAGTCATGTCACCACTAGAGTTATGGGTACCTTTGG GTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGAEST: gi|60397397|gb|DN230213.1|DN230213
genomic: CTTGGCGCTGGAAAGAGTCATGTCACCACTAGAGTTATGGGTACCTTTGGgtatgttccg ... cactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGA
EST: CTTGGCGCTGGAAAGAGTCATGTCACCACTAGAGTTATGGGTACCTTTGG GTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGAEST: gi|211042366|gb|FL052104.1|FL052104
genomic: CTTGGCGCTGGAAAGAGTCATGTCACCACTAGAGTTATGGGTACCTTTGGgtatgttccg ... cactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGA
EST: CTTGGCGCTGGAAAGARTCATGTCACCACTAGAGTTATGGGTACCTTTGG GTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGAEST: gi|40334583|gb|CK368653.1|CK368653
genomic: CTTGGCGCTGGAAAGAGTCATGTCACCACTAGAGTTATGGGTACCTTTGGgtatgttccg ... cactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGA
EST: CTTGGTGCTGGAAAGAGTCATGTCACCACTAGGGTTATGGGTACCTTTGG GTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGA
genomic: CTTGGCGCTGGAAAGAGTCATGTCACCACTAGAGTTATGGGTACCTTTGGgtatgttccg ... cactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGA
ggtttccatgaagttatattagtacagggttatgatggtctgattcactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGACATTTACAGCTTTGGAGTCGTTCTCCTTGAAGCAATTACCGGAAGGGAT
gtctgat putative branch site (score: 279)
ttcactct CT-rich tract
atgaagttatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttccgctatttgtgaccaaggtttccatgaagttatattagtacagggttatgatggtctgattcactctgcagGTATGTGGCACCAGAGTATGCAAATACTGGACTCTTGAACGAAAAGAGTGACATTTACAGCTTTGGAGTCGTTCTCCTTGAAGCAATTACCGGAAGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA