1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagttatataacctgctttgcttaaattaaactgttccgcactctaatttgctccgagccagggaaagagagtaatatattcttgccgttgcgtgtgatggcgcacagGAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGATCCAGAGCATGAGCAGCGGTTGAAGGTGTTGCAGCTCATGTAGCTTGCAC
species | Zea mays |
transcript | GRMZM2G034536_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATCTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAG GAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCCCCGAAGATGGATEST: gi|50330907|gb|CO526033.1|CO526033
genomic: GGATCTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAGgcaagttata ... tggcgcacagGAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGAT
EST: GGATTTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAG GAATATGTGGTGGAGGCCCTCCCTGGGGGTTACACGCCGCCGAAGATGGATEST: gi|88756867|gb|DY541008.1|DY541008
genomic: GGATCTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAGgcaagttata ... tggcgcacagGAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGAT
EST: GGATCTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAG GAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGAT
genomic: GGATCTGGCAGCGGCACTATCACATACTTACCAAGAAGGAGCTCACGAAGgcaagttata ... tggcgcacagGAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGAT
ccgagccagggaaagagagtaatatattcttgccgttgcgtgtgatggcgcacagGAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGATCCAGAGCATGAGCAGCGGTTGAAGGTGTTGCAGCTCATGTAGCTTGCAC
agtaatatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttatataacctgctttgcttaaattaaactgttccgcactctaatttgctccgagccagggaaagagagtaatatattcttgccgttgcgtgtgatggcgcacagGAATATGTGGTGGAGGACCTCCCTGGGGGTTACACGCCGCCGAAGATGGATCCAGAGCATGAGCAGCGGTTGAAGGTGTTGCAGCTCATGTAGCTTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA