1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatattatgctgtcattatagaagaagttatggggggtagagtttgtttgtagatttggcccaggctgttttgttttctctatgtttcatctcataaagttgttgtccagatggtcatgtgaaccagttctcacgcacggaatttaaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGGAGGTGGTGGTGGTTGCCTTGTGAGCTTCTAGTAAATACCAATCATCTT
species | Zea mays |
transcript | GRMZM2G033117_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|211180981|gb|FL324627.1|FL324627
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|60401049|gb|DN233856.1|DN233856
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|28361820|gb|CB240176.1|CB240176
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|148949363|gb|EC894818.2|EC894818
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|60350290|gb|DN217263.1|DN217263
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|211531442|gb|FL327582.1|FL327582
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|60357783|gb|DN224756.1|DN224756
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|60338189|gb|DN205162.1|DN205162
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|211531841|gb|FL338637.1|FL338637
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGEST: gi|83278897|gb|DV942905.1|DV942905
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
EST: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAG ACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATTTGAGCTGTCGAG
genomic: TGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCTCCATCGCGGAGgtatattatg ... aaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAG
tgttgtccagatggtcatgtgaaccagttctcacgcacggaatttaaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGGAGGTGGTGGTGGTTGCCTTGTGAGCTTCTAGTAAATACCAATCATCTT
ttctcac putative branch site (score: 173)
aatttaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattatgctgtcattatagaagaagttatggggggtagagtttgtttgtagatttggcccaggctgttttgttttctctatgtttcatctcataaagttgttgtccagatggtcatgtgaaccagttctcacgcacggaatttaaatctgcagACATTGTCACTGCTAGACCTATGCGGGAAGGAAGGCATCTGAGCTGTCGAGGAGGTGGTGGTGGTTGCCTTGTGAGCTTCTAGTAAATACCAATCATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT