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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacattgcattaccatggaaaatatgttttattctgatgttatcttgagcacactttatattttcaagtatgatagtaacgatgttcttgctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG

Basic information

species Zea mays
transcript GRMZM2G032505_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 5
----agacattgcattaccatggaaaatatgttttattctgatgttatcttgagcacactttatattttcaagtatgatagtaacgatgttctt----gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
    |   |  || || || |   || | | |||   | |  | ||  ||||   |         ||||| ||    | | |||  || || ||    ||| |  ||||||||||| ||||||||||||||||| || |||||||| || |||||||| || ||||||||||| || || || || ||||||||||| ||||||||||
acatatgaacagccttgccttcagaagtctattta--tttactatttacttgcatatg------gttttctagcgcaacaataatcatatttttttgggcttgcccagATGTTTATCGGTGATGGAGCAAAGCTGGTTCGGGATGCTTTTCAGCTTGCTAAGGAGAAAGCTCCCTGCATCATTTTCATTGATGAGATTGATGCCATTG

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA19G42110.1 (Glycine max), 3'ss of exon 3
agacattgcattaccatggaaaatatgttttattctgatgttatcttgagcacactttatattttcaagtatgatagtaacgatgttcttgctggttca-------gATGTTTATTGGTGATGG----AGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
    ||     |      |  ||||  |||| || |||| || | ||||  | |||   |   |  | |     |||| |   |  | ||     ||||       ||| |  ||  |   |||    |||||| |||||||| ||||| || ||||| || ||||||||  |||| || ||||||||||| ||||| || |||||     
----atcaatctttttcagctaata-attttcttgtgat-ttttgttgatgaaactcattgactgtatggggattagttattcttatattatgtcttcatattaagGATATAAATATGCTTTGGTTCTAGCAAAACTTGTCCGCGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATGGATGAAATTGATGC-----

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA03G39500.1 (Glycine max), 3'ss of exon 5
agacattgcattaccatggaaaatatgttttattctgatgt---tatcttgagcacactttatattttcaagtatgatagtaacgatgttcttgctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
      |  | ||   |   |  |  |||  ||  |    |   | |||        | | |   |||  | |     | |||            |  | ||||||||||| || || |||||||| ||||||| |||||| || ||||| || ||||||||  |||| || ||||||||||| ||||| || ||||| ||||
---atctatactattgttctacttgcgttagatgtttgcatacatgtctatgtgctgcatcagcatttggaatggaggaataatctaacctgaaattttacagATGTTTATAGGAGACGGAGCAAAACTTGTCCAGGATGCCTTTCAGCTGGCAAAAGAGAAGTCTCCATGCATTATATTTATAGATGAAATTGATGCAATTG

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G09100.1 (Arabidopsis thaliana), 3'ss of exon 5
agacattgcattaccatggaaaatatgttttattctgatgttatcttgagcacactttatattttcaagtatgatagtaacgatgttcttgctg--gttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
     |   |  || |  | |||  |   | ||| |||| || |       | | ||| |     |||    || ||||||  | ||    ||   ||  ||||||| || || ||||||||||| |||||||| ||||| |||| |||||| ||||||||| | |||||||||||||| || |||||||| || || || |
----gtatgaaaactagagtaaacgtaactgattttgatcttgttcctgtgatattttttgaac-caaacg-gaaagtaactttttttagacttatgtatagATGTTCATCGGAGATGGAGCAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAGAAATCCCCTTGTATTATATTCATAGATGAGATTGACGCAATAG

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------------------agacattgcattaccatggaaaatatgttttattctgatgttatct-tgagcacacttta-----tattttcaagtatgatagtaacgatgttcttgctggttca-----------gATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
                                                              |  | || |  |  | |||| |  |  ||||| | |  ||  | |  | |  |||  | |     |||  | |    |||| |||| ||  |  |  |   | ||           |||||| ||||| || ||||||||||||||||| ||||| || || |||||||||||||||||||| || ||||| || || ||||| || ||||||||||
gtatatatatatatatatatatatatatatatgagtatcagattcaattctcatctcttagaactctttaccctgtc-tggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacagATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAACTTGCCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTG

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 6
agacattgcattaccatggaaaatatgttttattctgatgttatcttgagcacactttatattttcaagt-atgatagtaacgatgttcttgctg---gttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
    ||||  |     || ||||  |||     ||       ||  | |  |      || | | ||  | |  | | |||  || | ||||       | |||||||| || || ||||| ||||| ||||| || ||||||||||||||||| ||||||||| | || ||||| || || |||||||| || ||||||||||
----attggttccaattgtaaaagttgtgactgtccatgagaattgttactatttgccatttatccatatgacaacattaattatctgcttgtaatgcatccagATGTTCATAGGGGATGGTGCAAAACTTGTTCGAGATGCATTCCAGCTTGCAAAAGAGAAATCCCCATGTATCATTTTCATTGATGAAATTGATGCCATTG

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------------------------------------agacattgcattaccatggaaaatatgttttattct-gatgttatcttgagcacactttatattttcaagtatgatagt-aacgatgttc-ttg-------------ctggttc--------agATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
                                                      ||  |||  || || |      | |||  | | ||  || ||  | || |   | |     | ||||  |||  | || || | | ||| |||             ||| | |        ||||||||||||| ||||| ||||| |||||  |||| || |||||||| || || || |||||||| ||||| || || ||||||||  ||||||| ||||
gtgatttcttggttttacttgtttatctatggactctcgtcagttctggtttaggatgttgttttgccttaacgcctttgtcatttacttaatttttccatgggtggagtcatcttgttcatttatcctggtcaaggctcttcattgactacaagatatcctgatacgtaatcacagATGTTTATTGGAGATGGTGCAAAACTTGTGAGGGACGCGTTCCAGCTAGCAAAGGAAAAAGCTCCCTGTATCATCTTCATTGATGAAGTAGATGCAATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589970|gb|BI674586.1|BI674586
EST:     CACAGACGAATGCCACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|149101526|gb|EE187649.2|EE187649
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|32932292|gb|CF037104.1|CF037104
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|60349052|gb|DN216025.1|DN216025
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|40303137|gb|CK347524.1|CK347524
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|60399057|gb|DN231873.1|DN231873
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|149077126|gb|EE165786.2|EE165786
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|32931353|gb|CF036165.1|CF036165
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|67010865|gb|CO439614.1|CO439614
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|60341549|gb|DN208522.1|DN208522
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|149027737|gb|EE154581.2|EE154581
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|60398226|gb|DN231042.1|DN231042
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|22133556|gb|BQ833772.1|BQ833772
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|148979720|gb|EE026793.2|EE026793
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|211370090|gb|FL332304.1|FL332304
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|21809844|gb|BQ668162.1|BQ668162
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|60340215|gb|DN207188.1|DN207188
EST:     AATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: AATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|211024727|gb|FL157445.1|FL157445
EST:     CCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|74241693|gb|DT649607.1|DT649607
EST:     TTAGCTGGTCCACAAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: TTAGCTGGTCCAC-AACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|211467054|gb|FL315144.1|FL315144
EST:     TTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: TTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|116820064|gb|EC863249.1|EC863249
EST:     CACAGACGAATGCAACGTTTCTTACATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCACAGCTTGC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTC-CAGCTTGC
EST: gi|149100563|gb|EE186648.2|EE186648
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCA
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|31558076|gb|CD527288.1|CD527288
EST:     AGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: AGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|149085415|gb|EE174921.2|EE174921
EST:     CGTTTTTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|149085416|gb|EE174922.2|EE174922
EST:     ACAGACGAATGCAACGTTTCTTAAATTAGCTGGGTC-ACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATG
genomic: ACAGACGAATGCAACGTTTCTTAAATTAGCTGG-TCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATG
EST: gi|149101527|gb|EE187650.2|EE187650
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTG
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTG
EST: gi|211287069|gb|FL337511.1|FL337511
EST:     CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: CACAGACGAATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
EST: gi|149100562|gb|EE186647.2|EE186647
EST:     AATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAG                         ATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC
genomic: AATGCAACGTTTCTTAAATTAGCTGGTCCACAACTTGTGCAGgtaatcagtt ... gctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagcacactttatattttcaagtatgatagtaacgatgttcttgctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG
                             tagtaac  putative branch site (score: 1)
                                        ttcttgct  putative PPT
          tttatattttcaagta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agacattgcattaccatggaaaatatgttttattctgatgttatcttgagcacactttatattttcaagtatgatagtaacgatgttcttgctggttcagATGTTTATTGGTGATGGAGCAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA