ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA

Basic information

species	Zea mays
transcript	GRMZM2G032505_T01
intron #	5
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 6

gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttc--tcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA
                                                      |    ||    | | | |||       || ||| |||  |     ||  | || | |||    ||| ||  | | ||| |||| ||||||||||   || ||  |  ||| ||   |   | |  |||||| |   |  |   ||||||| ||||| ||||| |||||||||||| |||| |||||||||||  |||| ||||| |||||||| || || || ||| | ||||||            
------------------------------------------------------gtatgtatgtctcacatgatt------tttatcccctggaatttttccta-cattgtttcaaattctat--aatataatcaaaacattcttattgaaaaaaatatattcttat-tgttaacaagcattttgctttattctatgacagTGAGGTTAGTGGTGACAGAGAAGTTCAGAGGACTATGTTGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG------------

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 6
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 3'ss of exon 6

gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA
                                                                                                     | |   |||||| || ||| | ||  ||||      |   |    ||    ||    ||     |  ||   ||  |  ||  |        |||||||||||| ||||| || || ||||| ||| |||| |||||||| ||  | |||||||| || |||||||| ||||||||  | || |||            
---------------------------------------------------------------------------------------------------gtacaaatctttttctgattccaattcatgta------tttctgcactttctcagctatttgctcaaatcacattctttggttgag-------agtacagTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAG------------

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 3'ss of exon 6

gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttag-tgtaaacaaatcattcttattaggaagaagcttatctgatgcatgct---ccataattttgtt---ctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA
                                                                          | |||   | || |    |  || |  | | |  |  |  | |||  ||  |  || |     ||     |||| | |  ||| || ||  |  || | ||   | |||   || |    || ||  | ||||||||| || || ||||| || || ||||||||||||||||| ||||||||||| || ||||| || ||||| |||||  | ||||||            
--------------------------------------------------------------------------gtaaaccattattg---gtttagcactacatctttcatgatatttttatcaaaatggatttggattgaaattatcaaggtgaa-ctcatgagcagcctccttgactatagacttttctgccttttattgcagTGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAG------------

upper sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 7

gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgc-ctatacaggatcagagcactttttttgtttca-atttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA
                                                        |    |   || ||   || ||||  || | || || ||||   |    | |  |   ||     | |   | ||      | |  |  ||||||  |||     | |    ||  || |   | ||| |||| | ||  |||||||| || || || ||||||||||| ||||| ||||||||||||||  | ||||| || ||||| || || || |||||  | ||||||            
-------------------------------------------------------gtatctcgtgttctatcttgcaaat--tagttgctctttacaaatttgacggagatgcattacggtacaaccaatggg---gagtgctgtttattaaaaag-----tgttcagtgattgtt--gttattgtgttattttactacagTGAGGTGAGTGGAGATAGAGAAGTGCAGCGAACAATGTTGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAG------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|21809843|gb|BQ668161.1|BQ668161

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCGCCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGGCAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|15589970|gb|BI674586.1|BI674586

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|149101526|gb|EE187649.2|EE187649

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|32932292|gb|CF037104.1|CF037104

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60349052|gb|DN216025.1|DN216025

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|40303137|gb|CK347524.1|CK347524

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|67025949|gb|CO454698.1|CO454698

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60343601|gb|DN210574.1|DN210574

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60399057|gb|DN231873.1|DN231873

EST:     ATTATATTTATAGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|149077126|gb|EE165786.2|EE165786

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60348868|gb|DN215841.1|DN215841

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|32931353|gb|CF036165.1|CF036165

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60341549|gb|DN208522.1|DN208522

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|22473220|gb|BU037700.1|BU037700

EST:     CCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: CCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|149027737|gb|EE154581.2|EE154581

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|211112761|gb|FL481602.1|FL481602

EST:     TTATTTTTATTGATGAGATAGATGCCATTTGGCCCCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: TTATATTTATTGATGAGATAGATGCCA-TTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60398226|gb|DN231042.1|DN231042

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|15590428|gb|BI675044.1|BI675044

EST:     CGTTTTGATAG                         TGAAGTTACCGGTGATAGAGAAGTTCAGCGGCCAATGTTGGAATTATTGAA
genomic: CGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|149096588|gb|EE182347.2|EE182347

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|148979720|gb|EE026793.2|EE026793

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|23512613|gb|BU672752.1|BU672752

EST:     AACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: AACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|211370090|gb|FL332304.1|FL332304

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60397037|gb|DN229856.1|DN229856

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60340215|gb|DN207188.1|DN207188

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|211024727|gb|FL157445.1|FL157445

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATRGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60357103|gb|DN224076.1|DN224076

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|45847085|gb|CN071028.1|CN071028

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|74241693|gb|DT649607.1|DT649607

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|6918604|gb|AW400134.1|AW400134

EST:     -TTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|211467054|gb|FL315144.1|FL315144

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|67010865|gb|CO439614.1|CO439614

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|5688622|gb|AI941637.1|AI941637

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|21626144|gb|BQ621065.1|BQ621065

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60353805|gb|DN220778.1|DN220778

EST:     AACGTTTTGATAG                         TGAAGTTAGCGGTGATAGCGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: AACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|31558076|gb|CD527288.1|CD527288

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|22473394|gb|BU037874.1|BU037874

EST:     ATTATATTTATTGATGAGATAGATGCCCTTGGCCCCCAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|60397276|gb|DN230092.1|DN230092

EST:     ATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|149027738|gb|EE286068.2|EE286068

EST:     TTATATTTTAT-GATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGGACA-TGTTTGGA-TTATTT
genomic: TTATATTT-ATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGG-ACAATGTT-GGAATTATT-

EST: gi|149085415|gb|EE174921.2|EE174921

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|211287069|gb|FL337511.1|FL337511

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

EST: gi|149100562|gb|EE186647.2|EE186647

EST:     ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAG                         TGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA
genomic: ATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 310

CAAAGCTTGTCCGGGATGCATTCCAGCTTGCCAAAGAGAAAGCTCCTTGTATTATATTTATTGATGAGATAGATGCCATTGGCACCAAACGTTTTGATAGgtatgttttg ... cttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 235

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 220

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 301

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA

                atctgat  putative branch site (score: 301)
                                    ttttgttctctt  putative PPT
                                ataattttgtt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

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gtatgttttgtatgacattttcagttcatgcatgattttattcctgttttggctgatgatactctttataggatgaaaatgttaatcgcctatacaggatcagagcactttttttgtttcaatttagtgtaaacaaatcattcttattaggaagaagcttatctgatgcatgctccataattttgttctcttggtacagTGAAGTTAGCGGTGATAGAGAAGTTCAGCGGACAATGTTGGAATTATTGAATCAACTGGATGGATTCAGCAGCGATGAGAGAATAAAGGTCATAGCTGCA

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