1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacctctggttgatgtttgctagtcatcgagttattttcttatgtgctttgtgcttctaatagctccattatgatcactcagATTGAAAATGGACACTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGGTTCTTCATGGAGATGGTTGTGTCTTGGGCTCTGGTCCATTGAATATTC
species | Zea mays |
transcript | GRMZM2G032496_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATACCTTCACCAGCCTATCAAAATATCATCAGCAGATAATATGCTTAAG ATTGAAAATGGACACCTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|78076228|gb|DV504662.1|DV504662
genomic: AATACCTTCACCAGCCTATCAAAATATCATCAGCAGATAATATGCTTAAGgtaacctctg ... gatcactcagATTGAAAATGGACACTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATACCTTCACCAGCCTATCAAAATATCATCAGCAGATAATATGCTTAAG ATTGAAAATGGACACCTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
genomic: AATACCTTCACCAGCCTATCAAAATATCATCAGCAGATAATATGCTTAAGgtaacctctg ... gatcactcagATTGAAAATGGACACTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
cgagttattttcttatgtgctttgtgcttctaatagctccattatgatcactcagATTGAAAATGGACACTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGGTTCTTCATGGAGATGGTTGTGTCTTGGGCTCTGGTCCATTGAATATTC
ttctaat putative branch site (score: 167)
tattttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctctggttgatgtttgctagtcatcgagttattttcttatgtgctttgtgcttctaatagctccattatgatcactcagATTGAAAATGGACACTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGGTTCTTCATGGAGATGGTTGTGTCTTGGGCTCTGGTCCATTGAATATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG