1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatggagaactatattttttatcttgttcactcatgctttagtcgttacagttttcctcagtaatcaaattagtataagaatgtgttctttcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTTTTGATCAGTTGCTCACCATACCCGAGCAAGACGAATGGGTGTACAGTG
species | Zea mays |
transcript | GRMZM2G031824_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32925672|gb|CF030484.1|CF030484
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32850032|gb|CD989713.1|CD989713
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32841464|gb|CD981145.1|CD981145
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32841170|gb|CD980851.1|CD980851
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32924871|gb|CF029683.1|CF029683
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32924893|gb|CF029705.1|CF029705
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32841167|gb|CD980848.1|CD980848
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|78113166|gb|DV531560.1|DV531560
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: AAGCCCTAAACAAACGACTTGGCACTGAG GATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|78111912|gb|DV530308.1|DV530308
genomic: AAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAG GATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32925223|gb|CF030035.1|CF030035
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGCCTEST: gi|32841238|gb|CD980919.1|CD980919
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32921666|gb|CF026478.1|CF026478
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAG GATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTAGAATGTCTEST: gi|32924738|gb|CF029550.1|CF029550
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32841288|gb|CD980969.1|CD980969
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|88748743|gb|DY532884.1|DY532884
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: GCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGA- GATTTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCEST: gi|32925872|gb|CF030684.1|CF030684
genomic: GCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGA-TTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTC
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32924755|gb|CF029567.1|CF029567
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAATGACGTGGAATGTCEST: gi|32839582|gb|CD979263.1|CD979263
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAA-GACGTGGAATGTC
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32840853|gb|CD980534.1|CD980534
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32835862|gb|CD975540.1|CD975540
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32925065|gb|CF029877.1|CF029877
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32922055|gb|CF026867.1|CF026867
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAG GATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTAGAATGTCTEST: gi|32920261|gb|CF025073.1|CF025073
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAG GATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTAGAATGTCTEST: gi|32841249|gb|CD980930.1|CD980930
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32840052|gb|CD979733.1|CD979733
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACGTGGCACTAAG GAGTTGGCCCTTCAGGGGATCGTTATGGAGATTGAAAGACGTGGAATGTCTEST: gi|32841608|gb|CD981289.1|CD981289
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
EST: ATGCTGCAAACATGTGGAATGAAGCTCTAAACAAACGACTTGGCACTGAG GATTTGGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
genomic: ATGCTGCAAACATGTGGAATGAAGCCCTAAACAAACGACTTGGCACTGAGgttgtagatt ... tcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCT
ttacagttttcctcagtaatcaaattagtataagaatgtgttctttcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTTTTGATCAGTTGCTCACCATACCCGAGCAAGACGAATGGGTGTACAGTG
tgttctttctt CT-rich tract
taatcaaattagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggagaactatattttttatcttgttcactcatgctttagtcgttacagttttcctcagtaatcaaattagtataagaatgtgttctttcttgtatagGATTTCGACCTTCAGGGGATCATTATGGAGATTGAAAGACGTGGAATGTCTTTTGATCAGTTGCTCACCATACCCGAGCAAGACGAATGGGTGTACAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
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- - - - - - - - - - - - - - - - catgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg