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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagaaataagaaaaaaagattctcaagtatctctttattctaactctgctaaccaggcttctgacgtgttagagcttatcaatgcttattttttggcagGTAATGGAAAATACCAACCTTGTGCTCCAGTATAAGAACCTGTGTTCTCAGCTAAACAATCGGTCGAGTATGGCTTCATCGTCATCTGTTAAAAATGATT

Basic information

species Zea mays
transcript GRMZM2G031656_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031656_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g06330.1 (Oryza sativa), 3'ss of exon 5
-----aaagaaataagaaaaaaagattctcaagtatctctttattctaactctgctaaccaggcttctgacgtgttagagcttatcaatgctt-attttttggcagGTAATGGAAAATACCAACCTTGTGCTCCAGTATAAGAACCTGTGTTCTCAGCTAAACAATCGGTCGAGTATGGCTTCATCGTCATCTGTTAAAAATGATT
     | |   || || | |  |||         | || | |  | ||    ||||  | |   |  | |  ||||||||||||| ||||||| ||||| |  ||| |  ||||||| |  | |  |||||  || |||||||| ||||| | |||||||||||| |||||||||||||   ||||  | || |  ||||||||||
ttaccataaccattaggacagtagagctctgctaagctttgttgttta----tgctttctaaattattta--tgttagagcttatgaatgctttattttcttacagATTCTGGAAAACATAAGCTCTGTGCAACAATATAAGAAGCTGTGCTGTCAGCTAAACAACCGGTCGAGTATGGTCGCATCTGCTTCAGCCAAAAATGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctaaccaggcttctgacgtgttagagcttatcaatgcttattttttggcagGTAATGGAAAATACCAACCTTGTGCTCCAGTATAAGAACCTGTGTTCTCAGCTAAACAATCGGTCGAGTATGGCTTCATCGTCATCTGTTAAAAATGATT
                                        cttatttttt  CT-rich tract
                                    aatgcttatttttt  TA-rich tract