1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaataacatacaaaaacttaccttttctttctgtattttcatctggtctgcctcaccgataagtgtccagatgcagttggtattgattatggtgtaattttctcttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTCGAATTCCACAGTCAGTGGACGAGTCGATGTTTCGTAG
species | Zea mays |
transcript | GRMZM2G030902_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|149104347|gb|EE289792.2|EE289792
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGEST: gi|22545757|gb|BU098131.1|BU098131
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAG
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACGAGGATATTTGTTGCTEST: gi|71769697|gb|DR967634.1|DR967634
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|148955713|gb|EC901400.2|EC901400
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACA-GGAACCAAAGAAGGCTACAAGGATATTTGTTGCEST: gi|87156149|gb|DY400938.1|DY400938
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAAC-AAAGAAAGCTACAAGGATATTTGTTGC
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACGAGGATATTTGTTGCTEST: gi|149096474|gb|EE182216.2|EE182216
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|149000018|gb|EE037116.2|EE037116
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|149104935|gb|EE290405.2|EE290405
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|26558833|gb|CA831068.1|CA831068
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAAEST: gi|22473110|gb|BU037590.1|BU037590
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAA
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACEST: gi|71304925|gb|DR788593.1|DR788593
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCAC
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|211138007|gb|FL213712.1|FL213712
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATTA-A-GGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|149080743|gb|EE169805.2|EE169805
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|21432115|gb|BQ547605.1|BQ547605
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACGAGGATATTTGTTGCTEST: gi|9952229|gb|BE638812.1|BE638812
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACGAGGATATTTEST: gi|13558465|gb|BG549821.1|BG549821
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTEST: gi|60350487|gb|DN217460.1|DN217460
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
EST: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAG GAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
genomic: AGCATGTTCTTGGGAGCCGTACATTAGAAGTGAAGATAGCTACTCCAAAGgtaaataaca ... cttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCT
ataagtgtccagatgcagttggtattgattatggtgtaattttctcttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTCGAATTCCACAGTCAGTGGACGAGTCGATGTTTCGTAG
tcttaac putative branch site (score: 2)
ttttctctt CT-rich tract
taattttctcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataacatacaaaaacttaccttttctttctgtattttcatctggtctgcctcaccgataagtgtccagatgcagttggtattgattatggtgtaattttctcttaacacagGAAGAAATGAAATCACAAGGAACAAAGAAAGCTACAAGGATATTTGTTGCTCGAATTCCACAGTCAGTGGACGAGTCGATGTTTCGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA