Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctggttttttagtgccctgctttggatttaccaagttgaaaaatttgacgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA

Basic information

species Zea mays
transcript GRMZM2G030784_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030784_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 3'ss of exon 5
gctggttttttagtgccctgctttggatttaccaa-----gttgaaaaatttga-cgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----
 || |   || | ||   ||  |   | ||| ||      | | ||| ||| |  |  || |||| |||||||||||||  ||  |       |  ||||||||||| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || |||     
tctagacctt-aatgtaatgtctcatagttagcatcatttgataaaagattagctcatcacatgagaattcaggctgaaatgactatg-----gactgttttacagAAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAGTAAG

upper sequence: GRMZM2G030784_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g05490.1 (Oryza sativa), 3'ss of exon 5
gctggttttttagtgccctgctttggatttaccaa-----gttgaaaaatttga-cgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA
 || |   || | ||   ||  |   | ||| ||      | | ||| ||| |  |  || |||| |||||||||||||  ||  |       |  ||||||||||| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || |||
tctagacctt-aatgtaatgtctcatagttagcatcatttgataaaagattagctcatcacatgagaattcaggctgaaatgactatg-----gactgttttacagAAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA

upper sequence: GRMZM2G030784_T01 (Zea mays), 3'ss of exon 5
lower sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
gctggttttttagtgccctgctttggatttaccaagttgaaaaatttgacgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----
                     ||||| |||  || |||   |  ||  |  | | |   | |  || ||   ||   ||       |||||||   ||||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||      
--------------------gtttgggttt--catgtttttatcttgcatccaaaacacacacccaagc---ataactc------ttgtttgtg--acagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA

upper sequence: GRMZM2G030784_T01 (Zea mays), 3'ss of exon 5
lower sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
gctggttttttagtgccctgctttggatttaccaagttgaaaaatttgacgccatatg-aaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----
                                   |||  |   ||| |      ||  |||  |||  || || | ||  | |   || ||||    |||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || |||||||||||      
-----------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaa-gcat--acttcttgattgt--ggcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71325325|gb|DR799341.1|DR799341
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|13558792|gb|BG550147.1|BG550147
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|6021111|gb|AW066039.1|AW066039
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|71433476|gb|DR814526.1|DR814526
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|14569384|gb|BI097707.1|BI097707
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTG
EST: gi|5296085|gb|AI782960.1|AI782960
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGT
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGT
EST: gi|21331670|gb|BQ487051.1|BQ487051
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|213178228|gb|FM191284.1|FM191284
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18162386|gb|BM332225.1|BM332225
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|7216447|gb|AW562569.1|AW562569
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAG
EST: gi|71323015|gb|DR798174.1|DR798174
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67010285|gb|CO439034.1|CO439034
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211531696|gb|FL104786.1|FL104786
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|76294301|gb|DV033869.1|DV033869
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|17931550|gb|BM268510.1|BM268510
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31355717|gb|CD440074.1|CD440074
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|19351223|gb|BM895755.1|BM895755
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|6021490|gb|AW066418.1|AW066418
EST:     GGCTGGGTCTACCATGGAGGTTGNTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGGTGCCTATGAACCA
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCA
EST: gi|32935763|gb|CF040575.1|CF040575
EST:     AAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: AAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211324554|gb|FL104645.1|FL104645
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67021074|gb|CO449823.1|CO449823
EST:     GGTTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|61236882|gb|DN586594.1|DN586594
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31355497|gb|CD439854.1|CD439854
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|60338268|gb|DN205241.1|DN205241
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|93013557|gb|EB639077.1|EB639077
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|74235418|gb|DT643332.1|DT643332
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67034586|gb|CO463136.1|CO463136
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|21760002|gb|BQ635543.1|BQ635543
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211335381|gb|FL104715.1|FL104715
EST:     GCTGGGTCTACCATGGGATGTTGT-GCTGCACAAACAAA-GCAATTGCTG                         AGAAAGATCA-G-ACTGGAGCAA
genomic: GCTGGGTCTACCATGG-ATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAA-GATCAAGGACTGGAGCAA
EST: gi|14242641|gb|BG840345.2|BG840345
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211326717|gb|FL104658.1|FL104658
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTT-TNTGCCTATGAACCAGTTTGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGT-TGCCTATGAACCAGTTTGG
EST: gi|32865187|gb|CF004869.1|CF004869
EST:     GGCTGGGTCTAC-ATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGA
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGA
EST: gi|40337088|gb|CK371158.1|CK371158
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31353766|gb|CD438123.1|CD438123
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|28576056|gb|CB281948.1|CB281948
EST:     TGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: TGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67020068|gb|CO448817.1|CO448817
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|14243110|gb|BG840832.2|BG840832
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18172029|gb|BM347417.1|BM347417
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18169056|gb|BM338896.1|BM338896
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|17931629|gb|BM268589.1|BM268589
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67012349|gb|CO441098.1|CO441098
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211335377|gb|FL104711.1|FL104711
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGC
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGC
EST: gi|32906873|gb|CF011686.1|CF011686
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGG
EST: gi|113703957|gb|EE681461.1|EE681461
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67016932|gb|CO445681.1|CO445681
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67023036|gb|CO451785.1|CO451785
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|84980759|gb|DW531108.1|DW531108
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211324557|gb|FL104648.1|FL104648
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTKTNTC-CCTATGAACCAGTTTGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGT-TGTTGCCTATGAACCAGTTTGG
EST: gi|7162498|gb|AW520120.1|AW520120
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|50325683|gb|CO520809.1|CO520809
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|38502719|gb|CF972579.1|CF972579
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|78109161|gb|DV527578.1|DV527578
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211525697|gb|FL104760.1|FL104760
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67021275|gb|CO450024.1|CO450024
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|7844331|gb|AW787553.1|AW787553
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31353828|gb|CD438185.1|CD438185
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18166360|gb|BM336199.1|BM336199
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|38502545|gb|CF972405.1|CF972405
EST:     GGCTGGGTTTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67026065|gb|CO454814.1|CO454814
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18165956|gb|BM335795.1|BM335795
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67024408|gb|CO453157.1|CO453157
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211528703|gb|FL104781.1|FL104781
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211528308|gb|FL091444.1|FL091444
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|60347447|gb|DN214420.1|DN214420
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|20208196|gb|BQ134285.1|BQ134285
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAG
EST: gi|31351126|gb|CD435483.1|CD435483
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|5439487|gb|AI820408.1|AI820408
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211405979|gb|FL414494.1|FL414494
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18384965|gb|BM418164.1|BM418164
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGATGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|71433477|gb|DR814527.1|DR814527
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|29544519|gb|CB604899.1|CB604899
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211534318|gb|FL091477.1|FL091477
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211522692|gb|FL104747.1|FL104747
EST:     G-CTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGGAGCA
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGG-AGCA
EST: gi|29544395|gb|CB604775.1|CB604775
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAG
EST: gi|211326711|gb|FL104652.1|FL104652
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGGACTGGAGCA
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGG-ACTGGAGCA
EST: gi|67011680|gb|CO440429.1|CO440429
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|19437215|gb|BM953625.1|BM953625
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACCAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|83278900|gb|DV942908.1|DV942908
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|8551638|gb|BE128809.1|BE128809
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67017841|gb|CO446590.1|CO446590
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67024324|gb|CO453073.1|CO453073
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31350868|gb|CD435225.1|CD435225
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211191318|gb|FL465408.1|FL465408
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18166630|gb|BM336469.1|BM336469
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18164729|gb|BM334568.1|BM334568
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18163088|gb|BM332927.1|BM332927
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|29544034|gb|CB604414.1|CB604414
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211525700|gb|FL104763.1|FL104763
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTT
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTT
EST: gi|67020170|gb|CO448919.1|CO448919
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31354917|gb|CD439274.1|CD439274
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211522297|gb|FL091413.1|FL091413
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|18384001|gb|BM417201.1|BM417201
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211213987|gb|FL471281.1|FL471281
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211324556|gb|FL104647.1|FL104647
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGWTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211519681|gb|FL104735.1|FL104735
EST:     GCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACCAAAAGCA-TTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTTGCCTATGAACCCAGTTTG
genomic: GCTGGGTCTACCATGGATGTTGTTGCTGCACAAAC-AAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTT-GCCTATGAACC-AGTTTG
EST: gi|17930054|gb|BM267014.1|BM267014
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67021862|gb|CO450611.1|CO450611
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|50325684|gb|CO520810.1|CO520810
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|7844330|gb|AW787552.1|AW787552
EST:     GGCTGGGTCTACCATGGAGGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|29544188|gb|CB604568.1|CB604568
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACCAAAGCCATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|71332087|gb|DR802949.1|DR802949
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31352108|gb|CD436465.1|CD436465
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|101389975|gb|EB816919.1|EB816919
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|31355762|gb|CD440119.1|CD440119
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|32908761|gb|CF013574.1|CF013574
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|93283118|gb|EB675382.1|EB675382
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|60348349|gb|DN215322.1|DN215322
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|67035472|gb|CO464005.1|CO464005
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|211328888|gb|FL104673.1|FL104673
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGAWCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGT
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGT
EST: gi|89250828|gb|DY622614.1|DY622614
EST:     GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
EST: gi|166431067|gb|EG269643.1|EG269643
EST:     GGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG
genomic: GGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 976

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGCAGAGGGAGGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1917

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGCAGAGGGAGGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2200

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGCAGAGGGAGGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1402

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGCAGAGGGAGGCTGGGTCTACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacctttca ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA
 atttgac  putative branch site (score: 1402)
                                           tttgtttt  putative PPT
        atatgaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctggttttttagtgccctgctttggatttaccaagttgaaaaatttgacgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
gctggtt
- - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - -ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctgtt