Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaaaagactagcagaacgcagaatgcatcatcgttttccctttttcattaatgtttttaatctgaacaagggtatgtatgttgatgatgataagGGCATTATGGGCGACGACGGACAGACGGATCTGCTGCACTCGTACGGGCTAGGGTATCCCGAGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCT

Basic information

species Zea mays
transcript GRMZM2G030712_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030712_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g05480.1 (Oryza sativa), 3'ss of exon 6
gtatgcaaa---aagactagcagaacgc-agaatgcatcatcgttttccctttttcattaatgtt-tttaatctgaacaagggtatgtatgttgatgatgataagGGCATTATGGGCGACGACGGACAGACGGATCTGCTGCACTCGTACGGGCTAGGGTATCCCGAGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCT---
||| ||| |   |  || | |   | || |  ||   |||  ||| |      |  |||| | |  || || || ||||| | ||    || |||  |  | ||||| || ||||   ||||  |  |||  ||| ||| || ||| ||||||||||| || || || ||||||||||| ||||| |||||||||||||||||||   
gtaagcagattcacaacaatccacatgccattatttttcacagttcttatacatcaattagtttgattcaaactcaacaatgataaacttgatga--acaaaaagGGAATCATGG---ACGAAAGGGAGAGAGATTTGCAGCTCTCCTACGGGCTAGGATACCCTGAACCCAACGTCGTGTTCGCTCTGTGCAGAGGCAGCCGCTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttcattaatgtttttaatctgaacaagggtatgtatgttgatgatgataagGGCATTATGGGCGACGACGGACAGACGGATCTGCTGCACTCGTACGGGCTAGGGTATCCCGAGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCT
     tcattaatgtttttaa  TA-rich tract