Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaccaaagaaccattcttcagttttgtcagcaattagttgttacttttacgatgaaaatcttgccagaaccaagttaacacagtccccctgcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG

Basic information

species Zea mays
transcript GRMZM2G030167_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030167_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 5
aaccaaagaaccattcttcagttttgtcagcaattagttgttacttttacgatgaaaatcttgccagaaccaagttaacacagt---ccccctgcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCA------TCTGCCGATGGTACGGCTGCTTCTATGTAAT-GGTTGCCGGCTGCACGCCTGCACTG
  |  |     || | |  |    || |    ||  | |    |   | |   | ||||  |   |    ||  ||  ||   |    ||| |  |||||||||||||||||||||||||||| |||    | || |||||    ||      |    |   ||||  |||||||| |||||||  | ||| || | |   |||      
-tcttatttgtcaattt--aacaatgaccctgataggctacagcacatgcagagcaaatggttataccttcatattttcattcttcttcccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGCAGGTT-CGAACCT------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37377401|gb|CF625300.1|CF625300
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|5846896|gb|AI999979.1|AI999979
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|71309730|gb|DR791144.1|DR791144
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATTTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|8577252|gb|BE129889.1|BE129889
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|14245322|gb|BG873904.1|BG873904
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|148991268|gb|EE032738.2|EE032738
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|33101816|gb|CF061776.1|CF061776
EST:     GTACCCTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|5706207|gb|AI941983.1|AI941983
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|93280879|gb|EB673143.1|EB673143
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|116817175|gb|EC859992.1|EC859992
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|60343554|gb|DN210527.1|DN210527
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|32865148|gb|CF004830.1|CF004830
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|32865312|gb|CF004994.1|CF004994
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|148951970|gb|EC897749.2|EC897749
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTTATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|4885978|gb|AI677098.1|AI677098
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|148951969|gb|EC897748.2|EC897748
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|60399344|gb|DN232158.1|DN232158
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|149037738|gb|EE155400.2|EE155400
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGGCAGACT
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACT
EST: gi|8367403|gb|BE050348.1|BE050348
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|32865147|gb|CF004829.1|CF004829
EST:     GTACCCTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: -TACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|67023589|gb|CO452338.1|CO452338
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTNTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTNTGGCCAGACTGCAGNCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|91869925|gb|EB400611.1|EB400611
EST:     TACACTTGACGCAAGACTAGAAGTTGTTTTCCCGCA-GAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: TACACTTGACGCAAGACTAGAAGTTGTTTTCC-GCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|6012480|gb|AW061917.1|AW061917
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|78087839|gb|DV516232.1|DV516232
EST:     CCGCAAGAAATTACCAGAA                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: CCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|78087840|gb|DV516233.1|DV516233
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|71309732|gb|DR791145.1|DR791145
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|211412112|gb|FL338990.1|FL338990
EST:     GTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|5770203|gb|AI973377.1|AI973377
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|111145880|gb|EE258157.1|EE258157
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATGCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|149086619|gb|EE176162.2|EE176162
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|149100210|gb|EE186272.2|EE186272
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|60355784|gb|DN222757.1|DN222757
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|33103917|gb|CF063877.1|CF063877
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|93280878|gb|EB673142.1|EB673142
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTTCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|16927283|gb|BM080352.1|BM080352
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|78025737|gb|DV494124.1|DV494124
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|60356696|gb|DN223669.1|DN223669
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|5922291|gb|AW055580.1|AW055580
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCNTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|14621557|gb|BI142318.1|BI142318
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|5325086|gb|AI783277.1|AI783277
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|60349595|gb|DN216568.1|DN216568
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|60356207|gb|DN223180.1|DN223180
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|8930347|gb|BE225111.1|BE225111
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|37400679|gb|CF637696.1|CF637696
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|91869923|gb|EB400610.1|EB400610
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|149100211|gb|EE186273.2|EE186273
EST:     ACACTTGACGCAAGACTAGAAGTTGTTTTCCCGCA-GAAATTTGC-AGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCC
genomic: ACACTTGACGCAAGACTAGAAGTTGTTTTCC-GCAAGAAATT-GCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCC
EST: gi|149086621|gb|EE176163.2|EE176163
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG
EST: gi|8930350|gb|BE225114.1|BE225114
EST:     GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCA
genomic: GTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 524

CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 790

CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 930

CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 497

CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... gcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacgatgaaaatcttgccagaaccaagttaacacagtccccctgcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG
                           agttaac  putative branch site (score: 497)
                                      tccccctgcccttgc  putative PPT
      atgaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaccaaagaaccattcttcagttttgtcagcaattagttgttacttttacgatgaaaatcttgccagaaccaagttaacacagtccccctgcccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATCGACTCATCTGCCGATGGTACGGCTGCTTCTATGTAATGGTTGCCGGCTGCACGCCTGCACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
aaccaaa
- - - - - ccattct
- - - - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - gatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacag