Sequence
atgc intronic sequence ATGC exonic sequence...atcatcattatcttatctttgtacactttttgggttatctttgcacttggcatcccctttatctttgtgtggattatgaacacatgaatttcttttccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030144_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g07090.2 (Oryza sativa), 3'ss of exon 5
-----atcatcattatc-ttatctttgtacactttttgggttatctttgcacttggcatcccctttatctttgtgtggattatgaacacatgaatttcttttccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
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gttgaattattcttttagtaaaccatgttttttgttgaagtcttctttcccgcagctgtgctctgtatcttatatcgaattatt------tgcattgcatttccagGTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATATGAATGTGTTGAGACTATAATGGGCATCGAAGCTACTAGTGGTTTACGTG
upper sequence: GRMZM2G030144_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA01G03890.1 (Glycine max), 3'ss of exon 5
-atcatcattatcttatctttgtacactttttgggttatctttgcacttggcatcccctttatctttgtgtggattatgaacacatgaatttcttt-tccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
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tatgtgagtaaatgaattttaatctactatt--gcttattattggtggtcatctcttcggaaattcaagactgataatttttacacttgctgcctggtttagGTGGCTACAAAGACTGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAATGTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTG
upper sequence: GRMZM2G030144_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA02G03800.1 (Glycine max), 3'ss of exon 4
-atcatcattatcttatctttgtacactttttgggttatctttgcacttggcatcccctttatctttgtgtggattatgaacacatgaatttctt-ttccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
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ttatgtgggtaatgaattttaatctactatt--gcttattgttggtggccatttcttctgaaatttaagactgataatttttacacttgctgcctgttttagGTGGCTACGAAGACTGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAATGTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTG
upper sequence: GRMZM2G030144_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 5
atcatcattatcttatctttgtacactttttgggttat-ctttgcacttggcatcccctttatctttgtgtggattatgaacacatga-atttcttttccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
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--tttgtgcatgctgctattatttacctagaaaaaaatacgctgcataaatggacaaagtttacttactgtggtttcatgacatgctacattccttttctagGTGGCAACAAAAACTGAGTCAAACAAAAATGCTGGGAATGCCATTTTGTATGAATGTGTTGAAACTATTATGAGCATTGAAGATACTAGTGGCTTACGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18649660|gb|BM498479.1|BM498479EST: TGCAGCG-GTATATCAATGACATTCTTGCTCAG GTTTCAACGAAAACCGAGTCAAATAAGGAATGCTGGAAATGCTATTTTATA
genomic: TGCAGCGAGTATATCAATGACATTCTTGCTCAGgtggtttgtt ... tcttttccagGTTTCAACGAAAACCGAGTCAAATAA-GAATGCTGGAAATGCTATTTTATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttggcatcccctttatctttgtgtggattatgaacacatgaatttcttttccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
tttcttttcc CT-rich tract
aatttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcatcattatcttatctttgtacactttttgggttatctttgcacttggcatcccctttatctttgtgtggattatgaacacatgaatttcttttccagGTTTCAACGAAAACCGAGTCAAATAAGAATGCTGGAAATGCTATTTTATATGAATGTGTGGAGACAATAATGAGCATTGAAGCTACAAGTGGTTTACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatga