1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtacaagttgttgcatcttttttattatatactctatatcactatgtgtttctgtcagtttagacataattgtgttttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG
species | Zea mays |
transcript | GRMZM2G030072_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAAT CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCEST: gi|9794785|gb|BE553093.1|BE553093
genomic: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAATgtatgtacaa ... tttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCC
EST: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAAT CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCEST: gi|8102628|gb|AW927429.1|AW927429
genomic: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAATgtatgtacaa ... tttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCC
EST: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAAT CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCEST: gi|33103277|gb|CF063237.1|CF063237
genomic: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAATgtatgtacaa ... tttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCC
EST: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAAT CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCEST: gi|9255043|gb|BE345511.1|BE345511
genomic: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAATgtatgtacaa ... tttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCC
EST: AACTTTTAGCAAGGCATACTGGAAAT CCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCEST: gi|32929221|gb|CF034033.1|CF034033
genomic: AACTTTTAGCAAGGCATACTGGAAATgtatgtacaa ... tttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCC
EST: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAAT CCACCAGAGAAAATAGACAAGAGTAATGAGAGGACCATTTTACATGGACTC
genomic: TGCACAACAGGAACACATTGGTCAAACTTTTAGCAAGGCATACTGGAAATgtatgtacaa ... tttataacagCCACCAGAGAAAATAGACAAG-GTAATGAGAGGACCATTTTACATGGACTC
actctatatcactatgtgtttctgtcagtttagacataattgtgttttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG
ataattgtgttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacaagttgttgcatcttttttattatatactctatatcactatgtgtttctgtcagtttagacataattgtgttttataacagCCACCAGAGAAAATAGACAAGGTAATGAGAGGACCATTTTACATGGACTCCTTGAAGGCAAAGGAGTTTGGAGTCATTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG