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gttggttttttccctttggttttgttttttgtcattttaaaagaactaccttctctttatctgctaaaatgatattttctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT
species | Zea mays |
transcript | GRMZM2G029573_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|211289805|gb|FL254555.1|FL254555
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: ATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|31361816|gb|CD446173.1|CD446173
genomic: ATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|89248122|gb|DY619908.1|DY619908
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCCACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|211518587|gb|FL052555.1|FL052555
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|211289807|gb|FL254557.1|FL254557
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTT-CTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATEST: gi|211287673|gb|FL254551.1|FL254551
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGAT
EST: ATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|71764310|gb|DR962247.1|DR962247
genomic: ATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|211287670|gb|FL254548.1|FL254548
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGEST: gi|31355937|gb|CD440294.1|CD440294
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
EST: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATG TACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
genomic: TCAAACCAATGTTTTCTTGGTGGCTTAATCATAAGAAATCTAAGCATATGgttggttttt ... tctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAG
cattttaaaagaactaccttctctttatctgctaaaatgatattttctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT
tgctaaa putative branch site (score: 2)
ttttctgtt putative PPT
taaaatgatattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttttttccctttggttttgttttttgtcattttaaaagaactaccttctctttatctgctaaaatgatattttctgttgtagTACTTCCAACTGGCGATGCAAAGAAACACTTGAGAAGTATCTGATTAAGAGGAACATCATGGGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA