1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtagtttatgtatctaattcccctccccctcttaacataatctgattattctgttactttgttttgtctatataattacctgacacatttttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATACCGCTTTCTATGAGTTTTCTTCATTGATAGAGTCAAAG
species | Zea mays |
transcript | GRMZM2G029396_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|61118554|gb|DN559515.1|DN559515
genomic: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|5929059|gb|AW056351.1|AW056351
genomic: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: CGTGCATGTCTTTAGAGGAGTTGTAAAGATNAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|60338190|gb|DN205163.1|DN205163
genomic: CGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|211142093|gb|FL424854.1|FL424854
genomic: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|61118553|gb|DN559514.1|DN559514
genomic: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|60399247|gb|DN232061.1|DN232061
genomic: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATAEST: gi|6022598|gb|AW067410.1|AW067410
genomic: TTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
EST: GCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG GTCTCACGGCACGAATAATTGACGAGACANATTCAATGTCAGACGTCTATA
genomic: GCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTGgtaagctact ... ttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATA
ttattctgttactttgttttgtctatataattacctgacacatttttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATACCGCTTTCTATGAGTTTTCTTCATTGATAGAGTCAAAG
acctgac putative branch site (score: 220)
tttttgctctt putative PPT
tttgttttgtctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttatgtatctaattcccctccccctcttaacataatctgattattctgttactttgttttgtctatataattacctgacacatttttgctcttagGTCTCACGGCACGAATAATTGACGAGACAAATTCAATGTCAGACGTCTATACCGCTTTCTATGAGTTTTCTTCATTGATAGAGTCAAAG
- - - tatgtat
- - - - - - - - - - - - - - - - -aacataa
- - - - - - - - - - - - - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacac