Sequence
atgc intronic sequence ATGC exonic sequence...atcatgaacgaagatgaaattgtatctcctttttcttgttcccaacaactgaagtacataatcttatgtggttcagcctactttccctttgtctttttagGTATATTTCAGCATTACTAGATGATGGTGAGCAGGCAAGTTTGCAGCAAGCTGTTGATCATGGTTGGCCAGCCTCACTGCACTTGATTGGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G029055_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g11120.1 (Oryza sativa), 3'ss of exon 5
-----atcatgaacgaagatgaaattgtatctcctttttcttgttcccaacaactgaagtacataatcttatgtggttcagcctactttccctttgtctttttagGTATATTTCAGCATTACTAGATGATGGTGAGCAGGCAAGTTTGCAGCAAGCTGTTGATCATGGTTGGCCAGCCTCACTGCACTTGATTGGAAAG
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taaagatcctatgcctataaatgaatacataatcttatatattatcccactctctt-----ttttttttcagactgattgttttattttcatatgttgtgtttagGTACATTTCAGCATTACTAGATGATGGGGAGAAGGCAAGTTTACAACAAGCAGTTGAACGTGGTTGGCCTGCCTCCCTACACTTGATAGGAAAG
upper sequence: GRMZM2G029055_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G23250.1 (Glycine max), 3'ss of exon 5
--atcatgaacgaagatgaaattgtatctcctttttcttgttcccaacaactgaagtacataatcttatgtggttcagcctactttccctttgtctttttagGTATATTTCAGCATTACTAGATGATGGTGAGCAGGCAAGTTTGCAGCAAGCTGTTGATCATGGTTGGCCAGCCTCACTGCACTTGATTGGAAAG
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acttctgctattctgctgaa--tatttttaattaaatgagttgctaattaccttcctaaacttttattgaatatcttttcttttattcttttcaatttgcagCTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTTAAAACTGTTTCTTCAGGTTGGCCAGCTTCACTGCACTTGATTGGTAAG
upper sequence: GRMZM2G029055_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G43550.1 (Glycine max), 3'ss of exon 5
atcatgaacgaagatgaaattgtatc-tcctttttcttgttcccaac-aactgaagtac--ataatctta-tgtggttcagcctactttccctttgtctttttagGTATATTTCAGCATTACTAGATGATGGTGAGCAGGCAAGTTTGCAGCAAGCTGTTGATCATGGTTGGCCAGCCTCACTGCACTTGATTGGAAAG
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-----agaaaagtttggatttctgctattctgctgaatatctttaattaaattagttgctaattaccttcctaaacttttattgaatatcttttcatatttgcagCTATATATCAGCACTATCTGATGATCAGGAACAACCTGATTTACTAAAAACTGTTTCTTCAGGTTGGCCAGCTTCACTGCACTTGATTGGTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caactgaagtacataatcttatgtggttcagcctactttccctttgtctttttagGTATATTTCAGCATTACTAGATGATGGTGAGCAGGCAAGTTTGCAGCAAGCTGTTGATCATGGTTGGCCAGCCTCACTGCACTTGATTGGAAAG
ttcagcctactttccc CT-rich tract
ataatcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcatgaacgaagatgaaattgtatctcctttttcttgttcccaacaactgaagtacataatcttatgtggttcagcctactttccctttgtctttttagGTATATTTCAGCATTACTAGATGATGGTGAGCAGGCAAGTTTGCAGCAAGCTGTTGATCATGGTTGGCCAGCCTCACTGCACTTGATTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT