Sequence
atgc intronic sequence ATGC exonic sequence...cgcgctttgcctgtttgtttgaccgcgctgcccgaaagcgcatttccgacgtcgtgtcggcgtttaagcggctgttaaggcgggagccgttttggtgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G028151_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 3'ss of exon 7
cgcgctttgcctgtttgtttgaccgcgctgcccgaaagcgcatttccgac--gtcgtgtcggcgtttaagcggctgttaaggcgggagccgttttgg-tgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
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-tgaccgcgcgcggcggc--ggcggcgaaaactcggattttacttttgattgatggtgagtgagttcgtcgtcgtgtgtgattggttgtatttgtggatgcagGCACGCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCGGCGATCAAGTTCCGGGGGCTCAACGCCGTCACCAACTTCGACATCACGAGGTACGACGTGGA
upper sequence: GRMZM2G028151_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S66_282V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------cgcgctttgcctgt-ttgtttgaccgcgctgcccgaaagcgcatttccgac-gtcgtgtcggcgt--ttaagcggctgttaaggcgggagccgttttggtgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
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gtgagtggcagtttgacttgggggtttgcagaggaggagggggtttgtatgtgttgttgggatgtggagggagat-gtgcagttgcagcagacgtggggatctgatccaacggtcggcgtggcgtgggtgtgtgtgagtcagGCACGCAGGAGGAAGCAGCAGAGGCATACGACCTGGCGGCGATAAAATTCCGTGGAATCAACGCCGTGACAAACTTCGACATCTCTCGGTACGACGCCGG
upper sequence: GRMZM2G028151_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ21317 (Selaginella moellendorffii), 3'ss of exon 7
cgcgctttgcctgtttgtttgaccgcgctgcccgaaagcgcatttccgacgtcgtgtcggcgtttaagcggctgttaaggcgggagccgttttggtg---cagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
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-------------------------------------gtaagttctcagttgtttaaagcaatgcaatgcctcgctcggtctgatcttgtttaaaccaaccagGCACGCAAGAGGAAGCCGCGGAAGCATACGACATCGCCGCGATCAAGTTCCGGGGCATCAACGCGGTCACCAACTTCGACATCAGCCGCTACGACCTCAA
upper sequence: GRMZM2G028151_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ26861 (Selaginella moellendorffii), 3'ss of exon 7
cgcgctttgcctgtttgtttgaccgcgctgcccgaaagcgcatttccgacgtcgtgtcg-gcgtttaagcggct-gttaaggcgggagccgttttggtg---cagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
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---------------------------------------gtaagttctcagttgtttagagcaatgcaatgcctcgctcggtctgatcttgtttaaaccaaccagGCACGCAAGAGGAAGCCGCGGAAGCATACGACATCGCCGCGATCAAGTTCCGGGGCATCAACGCGGTCACCAACTTCGACATCAGCCGCTACGACCTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78092257|gb|DV520631.1|DV520631EST: GCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCA GCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCC
genomic: GCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCAgtatgtgttc ... tttggtgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCC
EST:
gi|76012118|gb|DT939288.1|DT939288EST: GCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCA GCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCC
genomic: GCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCAgtatgtgttc ... tttggtgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccgacgtcgtgtcggcgtttaagcggctgttaaggcgggagccgttttggtgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
ccgtttt CT-rich tract
tttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgcgctttgcctgtttgtttgaccgcgctgcccgaaagcgcatttccgacgtcgtgtcggcgtttaagcggctgttaaggcgggagccgttttggtgcagGCACCCAGGAGGAGGCGGCGGAGGCGTACGACGTGGCCGCGATCAAGTTCCGCGGCCTCAGCGCGGTCACCAACTTCGACATCACGCGGTACGACGTGGA
- - - - - -tgtttgt
- - - - - - - - - - - - -cgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcggctg