Sequence
atgc intronic sequence ATGC exonic sequencegtaagtactgattgatgccttttaaccctatatgaatttcccaaaaatacatacctaatgtactagtaaatatttatttatttttaaaaaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCTGCGCGACGTGGACGACACGAACAAGCTGAAGGCCTCCATCTGGTGTCGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G027891_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g47320.1 (Oryza sativa), 3'ss of exon 4
------------------------gtaagtactga-ttgatgccttttaaccctatatgaatttcccaaaaatacatacctaatgtactagtaaatatttatttatttttaaa---aaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCTGCGCGACGTGGACGACACGAACAAGCTGAAGGCCTCCATCTGGTGTCGC
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gtaagtatcaatgcattaacctcagtttttattgtcttaaatcatttttctcctgaacattccatgcacaagaatgtactacattgactgctttagggttatcaatcatgtcatttgaaatttcagTTACCTTGACAACAAGAAAGAACATTGGTACCCTGGATCCATGGTTGTTCTCCGTGACGTGGATGACACAAACAAGCTAAAGGTATCCATATGGTGCCGT
upper sequence: GRMZM2G027891_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G23910.1 (Glycine max), 3'ss of exon 6
gtaagtactgattgatgccttt-----taaccctatatgaatttcccaaaaatacatacctaatgtactagtaaatatttatttatttttaaaaaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCTGCGCGACGTGGACGACACGAACAAGCTGAAGGCCTCCATCTGGTGTCGC
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gtatgtgctgagtagtgtctgtcccaattgccgtgttgtaatttttt---gttctatatctctctgattgactgatactaataatgacatgacctcaatgcagTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATCGTATACAGGGATTATGACCAATTAAACATGGTGAGAATGGCTATCTGGCCAACT
upper sequence: GRMZM2G027891_T01 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA10G43050.1 (Glycine max), 3'ss of exon 4
gtaagtactgattgatgccttt-----taaccctatatgaatttcccaaaaatacatacctaatgtactagta--aatatttatttatttttaaaaaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCTGCGCGACGTGGACGACACGAACAAGCTGAAGGCCTCCATCTGGTGTCGC
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gtatgtgctgagtagtgtctgtctctgttgtcttgttataatttcttgttc-tatatctctgattgactgatactaataatgacctgacctca------atgcagTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTGATTGTATACAGGGATTATGACCAATTAAACATGGTGAGGTTGGCTATCTGGCCAACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211010602|gb|FL466932.1|FL466932EST: GAGAAACTGTCCCTCATGAAGGAGAGACTGATGCA TTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCT
genomic: GAGAAACTGTCCCTCATGAAGGAGAGACTGATGCAgtaagtactg ... aaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaatacatacctaatgtactagtaaatatttatttatttttaaaaaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCTGCGCGACGTGGACGACACGAACAAGCTGAAGGCCTCCATCTGGTGTCGC
acctaat putative branch site (score: 3)
taatgtactagtaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtactgattgatgccttttaaccctatatgaatttcccaaaaatacatacctaatgtactagtaaatatttatttatttttaaaaaaaatccagTTACCTTGACAACAAGAAGGAGCACTGGTACCCTGGCTCCATGGTGGTCCTGCGCGACGTGGACGACACGAACAAGCTGAAGGCCTCCATCTGGTGTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG