1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attaaagcaaagtaaaaccatacatcctttcaagtagaatgctgtcacaacttttgtgagctaaagccttctttgcacggtatctctgtgttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTGCTGCTGTTATACATGCTGTGTAAGGAGAAAGCTTCGTCAAAAGTTGGA
species | Zea mays |
transcript | GRMZM2G027821_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|161587651|gb|EY960378.1|EY960378
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGAGAGGCTTGCAAEST: gi|211064881|gb|FL464879.1|FL464879
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAA
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|60357315|gb|DN224288.1|DN224288
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|211190398|gb|FL318556.1|FL318556
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGAGAGGCTTGCAATGATATTATGGCTTACTCCCTAATATTGTCCTEST: gi|211064880|gb|FL464878.1|FL464878
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|74235248|gb|DT643162.1|DT643162
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|32847753|gb|CD987434.1|CD987434
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGA CTTCTGGAGAGGCTTGCAATGATATTATGGCTTACTCCCTAATATTGTCCTEST: gi|71434265|gb|DR815315.1|DR815315
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: TGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|78078285|gb|DV506700.1|DV506700
genomic: TGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTTTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTEST: gi|71328372|gb|DR800816.1|DR800816
genomic: CTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
EST: GAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT CTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
genomic: GAGAATTGCTTCAATCGCCAAGGACAGGCCAATGTgtaagaatct ... ttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCT
cacaacttttgtgagctaaagccttctttgcacggtatctctgtgttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTGCTGCTGTTATACATGCTGTGTAAGGAGAAAGCTTCGTCAAAAGTTGGA
agctaaa putative branch site (score: 29)
ttgttttc putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaagcaaagtaaaaccatacatcctttcaagtagaatgctgtcacaacttttgtgagctaaagccttctttgcacggtatctctgtgttgttttcagCTTCTGGGGAGGCTTGCAATGATATTATGGCGTACTCCCTAATATTGTCCTGCTGCTGTTATACATGCTGTGTAAGGAGAAAGCTTCGTCAAAAGTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - aagcaaa
- - - - - - - - -ccataca
- - - - - - - - - - - - - - - - - - - -tgctgtc