1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatctctgaaaattctgattagacacgatctttttcttttcatgttgagttacttattagtgaatttgttattatcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGGGAAGCCATCCCCGAATAT
species | Zea mays |
transcript | GRMZM2G027115_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: -TCAAACTCACCAAGATGTAACATAGAAGCCAAAATTCTCTTCCAACAAG GGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGEST: gi|76018985|gb|DT946155.1|DT946155
genomic: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAGgtatctctga ... tcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
EST: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAG GGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGEST: gi|18169085|gb|BM338925.1|BM338925
genomic: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAGgtatctctga ... tcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
EST: AATTTTCTTCC-ACAAG GGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGEST: gi|71761908|gb|DR959845.1|DR959845
genomic: AATTTTCTTCCAACAAGgtatctctga ... tcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
EST: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAG GGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGEST: gi|71447208|gb|DR828258.1|DR828258
genomic: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAGgtatctctga ... tcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
EST: TGTAACATAGAAGCCAAAATTTTCTTCCAACAAG GGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGEST: gi|76018984|gb|DT946154.1|DT946154
genomic: TGTAACATAGAAGCCAAAATTTTCTTCCAACAAGgtatctctga ... tcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
EST: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAG GGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
genomic: TTCAAACTCACCAAGATGTAACATAGAAGCCAAAATTTTCTTCCAACAAGgtatctctga ... tcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGG
ctttttcttttcatgttgagttacttattagtgaatttgttattatcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGGGAAGCCATCCCCGAATAT
ttatctt CT-rich tract
ttattagtgaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctctgaaaattctgattagacacgatctttttcttttcatgttgagttacttattagtgaatttgttattatcttgtatagGGTGGAAAGAGTCTTTCTCTGCAATTGTTGGTGGAGATGAAGTAGAGAAGGGGAAGCCATCCCCGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG