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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcttggcctaattatagtatattcgaagttctgatttctgtttttgacatatagttctgctatcgactaacttatcagagaatacattctcgtacagGTAGTATATGGTGCTGATTTGGAGACTGGAACTTTTGGTAGCGGCTTCCCAAAGTCTTCTCCCGAAGTAAAATCTGATGTTGAGCATAAGTACTTAGAGT

Basic information

species Zea mays
transcript GRMZM2G027075_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027075_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g10770.1 (Oryza sativa), 3'ss of exon 5
gtttcttggcctaattata-gtatattcgaagttctgatttctgtttttgacatatagttctgctatcgactaacttatcagagaatacattct--cgtacagGTAGTATATGGTGCTGATTTGGAGACTGGAACTTTTGGTAGCGGCTTCCCAAAGTCTTCTCCCGAAGTAAAATCTGATGTTGAGCATAAGTACTTAGAGT
   | |||   ||| |  |   || ||  |   | |    |   ||    |||  || |  || | |    || |||||||||  ||    | |    |  ||||  |||||||||||||| |||||||||||||||| || || || || ||||| |  ||||| ||   ||||||||||| |||| |||| ||   | | |
--gtattgctgtaactgcataaatgttgtatcatgtaggatagtttccgtacaactactgttgtttttccgta-cttatcagaagatgtgatatattatgtagGTGATATATGGTGCTGATCTGGAGACTGGAACTTTCGGCAGTGGTTTTCCAAAATTATCTCCTGAGACAAAATCTGATGCTGAGGATAAATATGCACAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgacatatagttctgctatcgactaacttatcagagaatacattctcgtacagGTAGTATATGGTGCTGATTTGGAGACTGGAACTTTTGGTAGCGGCTTCCCAAAGTCTTCTCCCGAAGTAAAATCTGATGTTGAGCATAAGTACTTAGAGT
                      gactaac  putative branch site (score: 1)
                                          cattctc  putative PPT
      atatagtt  TA-rich tract