1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaatgacatccttcacaattggtcatacaagcataaaacacacatacatgacatgtatgcactatggtaatcatgcatgcttgtgtttgttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACATTTGGAGGGAAACTACTCAATTGAGGTGGCTACTACATTGGTGAATCTTG
species | Zea mays |
transcript | GRMZM2G026767_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT GCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACATEST: gi|76937335|gb|DV175108.1|DV175108
genomic: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttct ... ttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACAT
EST: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT GCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACATEST: gi|149098700|gb|EE184712.2|EE184712
genomic: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttct ... ttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACAT
EST: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT GCGCTTGATATCATG
genomic: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttct ... ttgcatgcagGCGCTTGATATCATG
tacatgacatgtatgcactatggtaatcatgcatgcttgtgtttgttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACATTTGGAGGGAAACTACTCAATTGAGGTGGCTACTACATTGGTGAATCTTG
taatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatgacatccttcacaattggtcatacaagcataaaacacacatacatgacatgtatgcactatggtaatcatgcatgcttgtgtttgttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACATTTGGAGGGAAACTACTCAATTGAGGTGGCTACTACATTGGTGAATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG