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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttctcattatgacagtctttatgtatccatctctatgatctttgttgaatgagaatataaattttgcagGGCTACTTTGCTCCGGTTGCAGTCAAATATGCTAGTGAACACCAAGACAAATTGAATCATCTTGTACTAGTGAATCCACCA

Basic information

species Zea mays
transcript GRMZM2G025659_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025659_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g69060.1 (Oryza sativa), 3'ss of exon 8
gttcttctcattatgacagtctttatgtatccat-------ctctatgatctttgttga-atgagaatataaattttgcagGGCTACTTTGCTCCGGTTGCAGTCAAATATGCTAGTGAACACCAAGACAAATTGAATCATCTTGTACTAGTGAATCCACCA
|| ||| |||||| | ||  ||  || |  | ||       ||||| |||| ||||| | |||  || ||| |  |||||||| |||||||||||  ||| | |||||||||||| |||||| || ||||| ||||| || ||  || |||| || ||||| 
gtacttgtcatta-gccatcctggatatgcctattatgaatctctaggatccttgtttatatgcaaacatacaacttgcagGGGTACTTTGCTCCAATTGTAATCAAATATGCTAATGAACATCAGGACAAGTTGAACCACCTGATATTAGTTAACCCACCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttatgtatccatctctatgatctttgttgaatgagaatataaattttgcagGGCTACTTTGCTCCGGTTGCAGTCAAATATGCTAGTGAACACCAAGACAAATTGAATCATCTTGTACTAGTGAATCCACCA
                              ttgaatgagaatataa  TA-rich tract