1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagataaaaataaactaacttatagtcctgtagcaagttcatctgtgttgatatgtatatggttcaaaacttgcatagaatctgggctaattgcattatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCAT
species | Zea mays |
transcript | GRMZM2G024615_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGAT GTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAEST: gi|149100619|gb|EE186707.2|EE186707
genomic: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGATgtaagataaa ... tatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTA
EST: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGAT GTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAEST: gi|211322146|gb|FL315932.1|FL315932
genomic: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGATgtaagataaa ... tatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTA
EST: GACGGCCTCGTC-AGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGAT GTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAEST: gi|149099698|gb|EE185747.2|EE185747
genomic: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGATgtaagataaa ... tatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTA
EST: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGAT GTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAEST: gi|40287149|gb|CK327541.1|CK327541
genomic: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGATgtaagataaa ... tatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTA
EST: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGAT GTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGTGTA
genomic: GACGGCCTCGTCCAGATTTTTTCTGGCGCTGTTTCCCTGATGGAAATGATgtaagataaa ... tatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTA
tatgtatatggttcaaaacttgcatagaatctgggctaattgcattatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCAT
ggctaat putative branch site (score: 3)
ttatcttt putative PPT
attatctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagataaaaataaactaacttatagtcctgtagcaagttcatctgtgttgatatgtatatggttcaaaacttgcatagaatctgggctaattgcattatctttaagGTTTATGATAACATCACTACTGGTGTTATATGCAATGGAGTGAAGAGCGTAATCAAGGAAGGCCACAAGAGCTTTCCCAGTGGACACACTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA