Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcctcacatctgtataaaattaatgcttatgttctaaaatatgactatccactgggctaactgtcatcttgtgtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA

Basic information

species Zea mays
transcript GRMZM2G023748_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023748_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g64090.1 (Oryza sativa), 3'ss of exon 5
--------gtatgttcctcacatctg-tataaaattaatgct-tatgt--tctaaaatatgacta---tccactgggctaactgtcatcttgtgtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAAT---TTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA
          | |||    || | |  ||| |||  || |   |||||   ||  | |   ||||   |  ||||   | | || ||| ||   ||| | |||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||   ||||    |   | | ||||||| || |||||    ||||||  
attaagaaaaaagttaacgacttataatatgaaacgaaagtagtatgtaaccttgacttaaactaagatagactga--tgattgacatttta-atgtatacagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAAGTGATCCGGGTGTTCTAAATGGTTTTCTTCATGCTCCTCGAATTTCTAG-AGACTTCCCTGCTTG--

upper sequence: GRMZM2G023748_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g21660.1 (Oryza sativa), 3'ss of exon 5
----------gtatgttcctca---catctgtataaaattaatgcttatgttctaaaatatgactatccactgggctaact-gtcatcttgtgtgttt------gcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATT-TTCCAATTAGGCTTA-GAATTTCCAGGAGACTCGAGTGCTTGGA
           | ||||||| |   |||   || |||||| || ||     |   | ||  | |||   | |  | | | | | ||| || | ||| |      |||||| || |||||||||||||||||||| |||||||||||||||||  |||||||| || ||    ||||||||    || |   |||||||    | ||||  
gtatgtgatcatgtgttccttatagcatagatacaaaatttat-ctgccacttggacatcagcctagttattctgatgatttgacatgttatttgtatcatcgtgcagGTTAGGTGCTTGTACCTGAAGAGCACCATGGGAAAGGTGTACCGAGTGTTCTAAGTTATTTTCTTTAGGCTTCTAGATGTTTTGGAGACTAAGCTACTTG--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357689|gb|DN224662.1|DN224662
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|15005408|gb|BI325475.1|BI325475
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|19057556|gb|BM736238.1|BM736238
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|166695057|gb|EG222478.1|EG222478
EST:     AAATGAGTGTCAACTTCCTCGTGTCCCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACC
EST: gi|211036043|gb|FL452225.1|FL452225
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|32945901|gb|CF050720.1|CF050720
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTA
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTA
EST: gi|60339572|gb|DN206545.1|DN206545
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|22819514|gb|BU499604.1|BU499604
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|37384022|gb|CF629054.1|CF629054
EST:     AAATGAGTGTCAACTTCCTCGTGTCCCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|78083264|gb|DV511657.1|DV511657
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33103067|gb|CF063027.1|CF063027
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGT
EST: gi|94472099|gb|EB701057.1|EB701057
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|78106842|gb|DV525260.1|DV525260
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33101485|gb|CF061445.1|CF061445
EST:     AAATGAGTGTCAACCTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGT
EST: gi|113691340|gb|DW850428.1|DW850428
EST:     CGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: CGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|71431480|gb|DR812530.1|DR812530
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|40335029|gb|CK369099.1|CK369099
EST:     AAATGAGTGTCAACTTCCTCGTGTCCCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|6022649|gb|AW067461.1|AW067461
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTG-ACCTGAAGAGCACT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACT
EST: gi|60345075|gb|DN212048.1|DN212048
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|93283525|gb|EB675789.1|EB675789
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60340358|gb|DN207331.1|DN207331
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|31405944|gb|CD484676.1|CD484676
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|32932830|gb|CF037642.1|CF037642
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGT
EST: gi|33093407|gb|CF053401.1|CF053401
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGT
EST: gi|15590095|gb|BI674711.1|BI674711
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCT
EST: gi|33092605|gb|CF052599.1|CF052599
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACC
EST: gi|32165024|gb|CD670342.1|CD670342
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33101024|gb|CF060984.1|CF060984
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGT
EST: gi|60397286|gb|DN230102.1|DN230102
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|71427092|gb|DR808142.1|DR808142
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|21391104|gb|BQ529153.1|BQ529153
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|91874847|gb|EB404804.1|EB404804
EST:     ATGAGTGTCAACTTCCTCGTGTCGCTCCTTGAAAAAGAATTTGGCAGAAT                         GTGAGATGCTTGTACCCTGAA
genomic: ATGAGTGTCAACTTCCTCGTGTCGCTC-TTGAAAAAGAATT-GGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACC-TGAA
EST: gi|33092991|gb|CF052985.1|CF052985
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGT
EST: gi|5871381|gb|AW017852.1|AW017852
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|32938208|gb|CF043027.1|CF043027
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTA
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTA
EST: gi|37380190|gb|CF626881.1|CF626881
EST:     AAATGAGTGTCAACTTCCTCGTGTCCCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60342211|gb|DN209184.1|DN209184
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60354949|gb|DN221922.1|DN221922
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60394512|gb|DN227382.1|DN227382
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33092920|gb|CF052914.1|CF052914
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTA
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTA
EST: gi|4628221|gb|AI619095.1|AI619095
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60397985|gb|DN230801.1|DN230801
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|29130047|gb|CB380751.1|CB380751
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|71427093|gb|DR808143.1|DR808143
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33103256|gb|CF063216.1|CF063216
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACC
EST: gi|6031328|gb|AW076185.1|AW076185
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGG-GTACCGGCTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGT
EST: gi|60341768|gb|DN208741.1|DN208741
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|22819602|gb|BU499692.1|BU499692
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33093653|gb|CF053647.1|CF053647
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGT
EST: gi|60394706|gb|DN227576.1|DN227576
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|78118451|gb|DV536836.1|DV536836
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60398182|gb|DN230998.1|DN230998
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60359382|gb|DN226355.1|DN226355
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|67025594|gb|CO454343.1|CO454343
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|78083265|gb|DV511658.1|DV511658
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|166451975|gb|EG101399.1|EG101399
EST:     AAATGAGTGTCAACTTCCTCGTGTCCCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACC
EST: gi|60341725|gb|DN208698.1|DN208698
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|60341972|gb|DN208945.1|DN208945
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|18177807|gb|BM379017.1|BM379017
EST:     AAATGAGTGTCAACTTCCTCGTGTCCCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|78022302|gb|DV490689.1|DV490689
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|45847495|gb|CN071438.1|CN071438
EST:     AATGAGTGTCAACTTACCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGA
genomic: AATGAGTGTCAACTT-CCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGA
EST: gi|5713924|gb|AI943909.1|AI943909
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|32802922|gb|CD955158.1|CD955158
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAACACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33103345|gb|CF063305.1|CF063305
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGT
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGT
EST: gi|67040988|gb|CO467243.1|CO467243
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|31910118|gb|CD651264.1|CD651264
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|5739582|gb|AI947377.1|AI947377
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|67017615|gb|CO446364.1|CO446364
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|29543486|gb|CB603868.1|CB603868
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|33103116|gb|CF063076.1|CF063076
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACC
EST: gi|61118288|gb|DN559249.1|DN559249
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
EST: gi|5361220|gb|AI795640.1|AI795640
EST:     AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAAT                         GTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC
genomic: AAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 36 (upstream exon), 49 (downstream exon)
Score: 669

TGCTGTTGGCAACTGCGGCATGGATGAGAAGCAGATCTTCCAGAATGTGCAAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA


Block sizes: 36 (upstream exon), 49 (downstream exon)
Score: 574

TGCTGTTGGCAACTGCGGCATGGATGAGAAGCAGATCTTCCAGAATGTGCAAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA


Block sizes: 36 (upstream exon), 49 (downstream exon)
Score: 253

TGCTGTTGGCAACTGCGGCATGGATGAGAAGCAGATCTTCCAGAATGTGCAAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA


Block sizes: 36 (upstream exon), 49 (downstream exon)
Score: 258

TGCTGTTGGCAACTGCGGCATGGATGAGAAGCAGATCTTCCAGAATGTGCAAATGAGTGTCAACTTCCTCGTGTCGCTCTTGAAAAAGAATTGGCAGAATgtatgttcct ... gtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttctaaaatatgactatccactgggctaactgtcatcttgtgtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA
                           ggctaac  putative branch site (score: 258)
       taaaatatgactat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttcctcacatctgtataaaattaatgcttatgttctaaaatatgactatccactgggctaactgtcatcttgtgtgtttgcagGTGAGATGCTTGTACCTGAAGAGCACTATGGGAAAGGTGTACCGGCTGTTCTAAATTTTCCAATTAGGCTTAGAATTTCCAGGAGACTCGAGTGCTTGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA