1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagaactcctcgttctagctgtagtgtccgtccttctcgcgcttctgaagcccgctattttttttttatataaagtttgacatcgatcatccccttccagGGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAACCTCTCGAGCCTCTACTGGTTTGACATCGCCGACAATCAGTTGAGCGGT
species | Zea mays |
transcript | GRMZM2G023715_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAAAGCTGTCCTACAT GGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAAEST: gi|148981984|gb|EE028044.2|EE028044
genomic: GCCAAAGCTGTCCTACATgtaagaactc ... ccccttccagGGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAA
EST: CATGGCACCATCCCCGATGAGCTAGGAAGCCTGCCAAAGCTGTCCTACAT GGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAAEST: gi|76291831|gb|DV031399.1|DV031399
genomic: CATGGCACCATCCCCGATGAGCTAGGAAGCCTGCCAAAGCTGTCCTACATgtaagaactc ... ccccttccagGGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAA
EST: CATGGCACCATCCCCGATGAGCTAGGAAGCCTGCCAAAGCTGTCCTACAT GGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAAEST: gi|71768121|gb|DR966058.1|DR966058
genomic: CATGGCACCATCCCCGATGAGCTAGGAAGCCTGCCAAAGCTGTCCTACATgtaagaactc ... ccccttccagGGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAA
EST: CATGGCACCATCCCCGATGAGCTAGGAAGCCTGCCAAAGCTGTCCTACAT GGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAA
genomic: CATGGCACCATCCCCGATGAGCTAGGAAGCCTGCCAAAGCTGTCCTACATgtaagaactc ... ccccttccagGGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAA
tgaagcccgctattttttttttatataaagtttgacatcgatcatccccttccagGGCACTGAATTCGAACCAGTTCTCTGGGAAAATACCAGCTTCGCTGGGAAACCTCTCGAGCCTCTACTGGTTTGACATCGCCGACAATCAGTTGAGCGGT
gtttgac putative branch site (score: 4)
tcatccccttcc putative PPT
tattttttttttatat TA-rich tract