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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaagtttactgctagtgtctttgttgcaaatcaagtgccacacatgctctatgttattgaatacgcctcactgaactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCCGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA

Basic information

species Zea mays
transcript GRMZM2G023289_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 5
gtaccaagtttactgctagtgtctttgttgcaaatcaagtgccacacatgctctatgtt-attgaatacgcctcact-gaactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCCGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA
||| ||   |||      || ||| || ||| ||||||||| |||  ||  ||| |||| ||     ||   ||| | || |||  |||||||| || |||||||| || |||| |||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||  ||||||| ||||
gtatcacagttatgat--gtatctctgctgctaatcaagtggcacg-attttctgtgtttatcagcaacttttcatttgatcttggcagGACTTCGGAATCAAATATAACATGGAAAATGGTGGACCTGCCCCTGAATCGGTTACTGATAAGATCTTCTCTAATACAACGACAATTACTGAATATCTCA

upper sequence: GRMZM2G023289_T03 (Zea mays), 3'ss of exon 5
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------------------gtaccaagtttact-gctagtgtctttgttgcaaatcaagtgccacacatgctctatgttattga-atacgcctcactgaactttc--cagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCCGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA
                                                       ||      | |  |   | ||   ||| ||   ||| |  |  |  | |||    ||   | | | |   |  ||  |   | ||   ||||| ||||| |||||||||||||||| |||||| |||||||| ||||||||  | || || || |||| |   || || | |||||||   || ||||  |
gtccgttctgttcttgttccatctctactgtgctatcctttcatttgaactattcgttttgtatctctttatttgttctttttttaataataagatatc-tagatggataataagactaagaggtgattccataccccttgtacagGATTTTGGAATCAAATACAATATGGAAAATGGAGGACCTGCTCCTGAATCAATCACTGATAAAATTTACGAGAACACTAAGACAATCAAGGAGTACCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519862|gb|FL340800.1|FL340800
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211510167|gb|FL335461.1|FL335461
EST:     CTGGTGCCTTCATCTTAACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|31353596|gb|CD437953.1|CD437953
EST:     CTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAACATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211114423|gb|FL039504.1|FL039504
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGT
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGT
EST: gi|211538908|gb|FL379332.1|FL379332
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211245824|gb|FL313144.1|FL313144
EST:     GGTGCCTTCATCTTGACAGCGAGCCATAAACCCAGGTGGTCCTACGGGAG                         GACTTCGGTATCAAATACAATATGGGGAAATGGTGGACCTGCCCCTGAAT
genomic: GGTGCCTTCATCTTGACAGCGAGCCATAA-CCCAGGTGGTCCTACGG-AGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGG-AAATGGTGGACCTGCCCCTGAAT
EST: gi|211409150|gb|FL322197.1|FL322197
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211348782|gb|FL410664.1|FL410664
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCG
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211514328|gb|FL308791.1|FL308791
EST:     CTGGTGCCTTCATCTTGACAGCGAGNCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAA
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAA
EST: gi|211320241|gb|FL338456.1|FL338456
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211430936|gb|FL367558.1|FL367558
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGNCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGNGGACCTGCCCCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCC-TGAATC
EST: gi|211143693|gb|FL324984.1|FL324984
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211092187|gb|FL375383.1|FL375383
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|149106401|gb|EE292127.2|EE292127
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211515016|gb|FL344872.1|FL344872
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTG
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTG
EST: gi|211420086|gb|FL350025.1|FL350025
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211445897|gb|FL403744.1|FL403744
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGGAAATGGTGGACCTGCCCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGG-AAATGGTGGACCTGCCCCTGAATC
EST: gi|211137320|gb|FL356389.1|FL356389
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTT-GGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATC
EST: gi|211177446|gb|FL359119.1|FL359119
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211217606|gb|FL408377.1|FL408377
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211012104|gb|FL418130.1|FL418130
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|148931122|gb|EC873792.2|EC873792
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211114429|gb|FL039510.1|FL039510
EST:     TGGTGCCTTCATCTTGACAGCGAGCCATAAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAA
genomic: TGGTGCCTTCATCTTGACAGCGAGCCATAA-CCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAA
EST: gi|211079915|gb|FL412204.1|FL412204
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211220603|gb|FL338340.1|FL338340
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCC
EST: gi|67021929|gb|CO450678.1|CO450678
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211111130|gb|FL394545.1|FL394545
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211317021|gb|FL376013.1|FL376013
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAA-TGGTGGGAC-TGCCCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGG-ACCTGCCCCTGAATC
EST: gi|211009326|gb|FL418558.1|FL418558
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGGAAATGGTGGACCTGCCCCCTGA-T
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGG-AAATGGTGGACCTGCCCC-TGAAT
EST: gi|211260711|gb|FL355112.1|FL355112
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211058754|gb|FL342287.1|FL342287
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211030301|gb|FL309717.1|FL309717
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211030302|gb|FL309718.1|FL309718
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211394811|gb|FL369335.1|FL369335
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211443060|gb|FL370676.1|FL370676
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|31356531|gb|CD440888.1|CD440888
EST:     CTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAACATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211099119|gb|FL353128.1|FL353128
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211491900|gb|FL325739.1|FL325739
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGGAAATGGTGGACCTGCCCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGG-AAATGGTGGACCTGCCCCTGAATC
EST: gi|31354050|gb|CD438407.1|CD438407
EST:     CTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAACATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|213173746|gb|FM188063.1|FM188063
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATANNNGGAAATGGTGGACCTGCCCCTGAATC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATG-GGAAATGGTGGACCTGCCCCTGAATC
EST: gi|211445226|gb|FL373040.1|FL373040
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211419246|gb|FL320476.1|FL320476
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211383896|gb|FL356595.1|FL356595
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|31351485|gb|CD435842.1|CD435842
EST:     CTGGTGCCTTCATCTTGACAGCAAGCCATAATCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAACATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211121113|gb|FL321102.1|FL321102
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211134618|gb|FL369500.1|FL369500
EST:     TGGTGCCTTCATCTTGACAGCCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGGATCACATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: TGGTGCCTTCATCTTGACAGC-GAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|149060809|gb|EE157261.2|EE157261
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211200656|gb|FL341863.1|FL341863
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|149083128|gb|EE172391.2|EE172391
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211477530|gb|FL326610.1|FL326610
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
EST: gi|211462418|gb|FL327911.1|FL327911
EST:     CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAG                         GACTTCGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC
genomic: CTGGTGCCTTCATCTTGACAGCGAGCCATAACCCAGGTGGTCCTACGGAGgtaccaagtt ... aactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaagtgccacacatgctctatgttattgaatacgcctcactgaactttccagGACTTTGGTATCAAATACAATATGGGAAATGGTGGACCTGCCCCTGAATCCGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCA
                                    gcctcac  putative branch site (score: 3)
                                               ctttcc  putative PPT
                     tatgttattgaata  TA-rich tract