1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgggaggcaatttgaaaagttttctcatagttcctgtttatcttaatgtgtatatcttaaccatgctcatatccttttttatatataatatatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTGAAGAAGCTATCAGTGTTGCCGAACCAAAATTTATTGAAGACGAAGCTC
species | Zea mays |
transcript | GRMZM2G022997_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTEST: gi|211058621|gb|FL339128.1|FL339128
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTEST: gi|51592786|gb|CV071932.1|CV071932
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTEST: gi|211197623|gb|FL318610.1|FL318610
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTEST: gi|211467194|gb|FL319591.1|FL319591
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTEST: gi|211302287|gb|FL347329.1|FL347329
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTEST: gi|211459419|gb|FL313798.1|FL313798
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
EST: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAG ATAGCGCGCCGTTNATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
genomic: CAAATGAGTATGGGATCAACCCAAAGCAAAAACTGAAAATCGGCTCAAAGgtttgttcgt ... tatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGT
atgtgtatatcttaaccatgctcatatccttttttatatataatatatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTGAAGAAGCTATCAGTGTTGCCGAACCAAAATTTATTGAAGACGAAGCTC
tcttaac putative branch site (score: 91)
tcatatccttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaggcaatttgaaaagttttctcatagttcctgtttatcttaatgtgtatatcttaaccatgctcatatccttttttatatataatatatcgactagATAGCGCGCCGTTTATTGGGAAAAATCCTAATCGATCTACGCAACACTCGTGAAGAAGCTATCAGTGTTGCCGAACCAAAATTTATTGAAGACGAAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - -gttcctg