1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catatttatctatgatcttgcaaaccttgtgcttatacaaaacctagtgctcttatacatcataagcttgtttgatatgattgtttcattgggttcttagGGATATTTCATCAAATGAGTTTACTGGAAGCATTCCTGGAACCATAGGTTCATCCAAGTTACAGACTGC
species | Zea mays |
transcript | GRMZM2G022897_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGACTGGAAGCTTACCACCTGGTTTAGGTCAACCTTCACTTGTGTCACT GGATATTTCATCAAATGAGTTTACTGGGAAGCATTCCTGGAEST: gi|61119400|gb|DN560361.1|DN560361
genomic: CTGACTGGAAGCTTACCACCTGGTTTAGGTCAACCTTCACTTGTGTCACTgtaagtacac ... gggttcttagGGATATTTCATCAAATGAGTTTACTGG-AAGCATTCCTGGA
EST: CTGACTGGAAGCTTACCACCTGGTTTAGGTCAACCTTCACTTGTGTCACT GGATATTTCATCAAATGAGTTTACTGGAAGCATTCCTGGAACCATAGGTTC
genomic: CTGACTGGAAGCTTACCACCTGGTTTAGGTCAACCTTCACTTGTGTCACTgtaagtacac ... gggttcttagGGATATTTCATCAAATGAGTTTACTGGAAGCATTCCTGGAACCATAGGTTC
agtgctcttatacatcataagcttgtttgatatgattgtttcattgggttcttagGGATATTTCATCAAATGAGTTTACTGGAAGCATTCCTGGAACCATAGGTTCATCCAAGTTACAGACTGC
gtttgat putative branch site (score: 62)
ttctt putative PPT
ttatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatttatctatgatcttgcaaaccttgtgcttatacaaaacctagtgctcttatacatcataagcttgtttgatatgattgtttcattgggttcttagGGATATTTCATCAAATGAGTTTACTGGAAGCATTCCTGGAACCATAGGTTCATCCAAGTTACAGACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - -tcttgca
- - - - - - - - - - - - - -tgtgctt
- - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca