1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtactgttgtgcagatattgttacagagtctggtcatatgcctttgtgtaaaattgccatttattagaacctttcaaattttctgaagtattcagattgatgaaaaaatatcccagtgcattcttcatgtgccattatatatagtgtaacactttaatccactaacctttttattggtatgcttcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAGCAGCTATGACTTCCTTTAAGGTCCATCAAGACAAGTCATCATTCACAG
species | Zea mays |
transcript | GRMZM2G020721_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG AATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAEST: gi|148986950|gb|EE030765.2|EE030765
genomic: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTA
EST: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG AATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAEST: gi|71448158|gb|DR829208.1|DR829208
genomic: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTA
EST: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG AATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAEST: gi|211035508|gb|FL319750.1|FL319750
genomic: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTA
EST: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG AATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAEST: gi|211342552|gb|FL342004.1|FL342004
genomic: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTA
EST: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG AATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCEST: gi|91875375|gb|EB405332.1|EB405332
genomic: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATC
EST: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG AATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAEST: gi|211440830|gb|FL365412.1|FL365412
genomic: TTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTA
EST: TTATTTTTACATATGTGATCGTAACAA-CTTGCTTGGAGAGTCTGC-AAG AATTACAGCCGAGATCTGTTCCTTTCCCTCTACTTTCTTCTTATCATTGGA
genomic: TTATTTTTACATATGTGATCGTA-CAAACTTGCTTGGAGAGTCTGCCAAGgtactgttgt ... tcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTA
atatagtgtaacactttaatccactaacctttttattggtatgcttcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAGCAGCTATGACTTCCTTTAAGGTCCATCAAGACAAGTCATCATTCACAG
cactaac putative branch site (score: 1)
cttcatct putative PPT
tttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttgtgcagatattgttacagagtctggtcatatgcctttgtgtaaaattgccatttattagaacctttcaaattttctgaagtattcagattgatgaaaaaatatcccagtgcattcttcatgtgccattatatatagtgtaacactttaatccactaacctttttattggtatgcttcatctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAGCAGCTATGACTTCCTTTAAGGTCCATCAAGACAAGTCATCATTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT