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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaactttacaggcagttttacccttgaaagcattggaaattgttttttatttcatcataatgccagttcccttttatgttcatgttgtctgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAAGAGCACAACAAACATGTAAATGAGTTGAGGCTTGCAGTCAATGCACATGCCGGTGATAA

Basic information

species Zea mays
transcript GRMZM2G019907_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019907_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g59350.1 (Oryza sativa), 3'ss of exon 8
----agaactttacaggcagttttacccttgaaagcattggaaattgttttttatttcatcataatgccagttcccttttatgt--tcatgttgtctgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAAGAGCACAACAAACATGTAAATGAGTTGAGGCTTGCAGTCAATGCACATGCCGGTGATAA
    | | | |   ||  ||||| |          |||||  || | |    |||     ||  |||||  ||     | ||||  | ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||  |||||| |||||||| || ||||||||
gtagatatcatggtagctagtttcagttgct----cattgttaagtatccaatatactgcca--atgcctttttatggtaatgtactgatgttttctaatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGGTGGTTGGAGGAGCATAACAAACATATAAATGAGTTGAGGGCTGCAGTTAATGCACACGCTGGTGATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttcatcataatgccagttcccttttatgttcatgttgtctgatctgtagGAGCTTTGGCATTTGACATGGAGTATGCACGCTGGTTGGAAGAGCACAACAAACATGTAAATGAGTTGAGGCTTGCAGTCAATGCACATGCCGGTGATAA
                                          gtctgat  putative branch site (score: 4)
                           ttttatgtt  TA-rich tract