1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attataattattaaaatggaattcaattctaacgaaacaaacggggtctaactgttatttagagggccacgttctgcttgtcctaatggttctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTGTACCTTCTCCCTGCTCTGCCCCGCAACAAGTGGCCTCAAGGCTACGTT
species | Zea mays |
transcript | GRMZM2G019673_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|32788877|gb|CD941113.1|CD941113
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|32798890|gb|CD951126.1|CD951126
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|32799228|gb|CD951464.1|CD951464
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|37377099|gb|CF625124.1|CF625124
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|32799334|gb|CD951570.1|CD951570
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCGATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|211427629|gb|FL452060.1|FL452060
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|71309632|gb|DR791094.1|DR791094
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|71309630|gb|DR791093.1|DR791093
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|211427630|gb|FL452061.1|FL452061
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|211427631|gb|FL452062.1|FL452062
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|67026471|gb|CO455220.1|CO455220
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|60346394|gb|DN213367.1|DN213367
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTEST: gi|78113504|gb|DV531895.1|DV531895
genomic: AGCAATCTGTTCACTGCACATCCACCTTTCCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
EST: GCAATCTGTTCACTGCACATCCACCTTTTCCAAATTGATGCAAATTTTGG GTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
genomic: GCAATCTGTTCACTGCACATCCACCTTT-CCAAATTGATGCAAATTTTGGgtaaacatca ... tctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTT
gtctaactgttatttagagggccacgttctgcttgtcctaatggttctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTGTACCTTCTCCCTGCTCTGCCCCGCAACAAGTGGCCTCAAGGCTACGTT
tcctaat putative branch site (score: 70)
ttctcttac putative PPT
tgttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attataattattaaaatggaattcaattctaacgaaacaaacggggtctaactgttatttagagggccacgttctgcttgtcctaatggttctcttacagGTTCCCAGCTGCGTTGTCGGAAATGCTGGTACAGAGCACTGGGACCGACTTGTACCTTCTCCCTGCTCTGCCCCGCAACAAGTGGCCTCAAGGCTACGTT
- - - - - - - - - - - - - - - - - aaacaaa