1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttccctctccggtcgataagaatatggataaatgtttggtgttatcagcatgttattatctttcattgatcatgttgtacgcaactttgtttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
species | Zea mays |
transcript | GRMZM2G019437_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|67022687|gb|CO451436.1|CO451436
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|71420934|gb|DR805240.1|DR805240
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|149076153|gb|EE164742.2|EE164742
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|67023553|gb|CO452302.1|CO452302
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|50332369|gb|CO527495.1|CO527495
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|76289469|gb|DV029037.1|DV029037
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|148952757|gb|EC898739.2|EC898739
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAG GCACCAGAGCTACTTTCTATGCTGTTTCATTTAGEST: gi|71420929|gb|DR805239.1|DR805239
genomic: CAGGTCCAGTGATTGCGTGTGAAAGGTTTTCTGTTGATGAATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
EST: AATGTATTAAG ACACCAGAGCTACTTTCTATGCTGTTTCATTTAG
genomic: AATGTATTAAGgtaggtgata ... ttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
cagcatgttattatctttcattgatcatgttgtacgcaactttgtttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
cattgat putative branch site (score: 19)
ctttgttt putative PPT
ttattatctttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccctctccggtcgataagaatatggataaatgtttggtgttatcagcatgttattatctttcattgatcatgttgtacgcaactttgtttgtttgcagGCACCAGAGCTACTTTCTATGCTGTTTCATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - gataagaa
- - - - - - - - - - - - - - - -atgtttg
- - - - - - - - - - - - - - - - - - - - - - -cagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta