1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgcttatttctattctgtaagtaccaaaacttctaccacttcttaaaaaataccagctacttacaactagtacttaaatcattgtaattttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTATTTGCATTTGGAAAATGTACGGCAAAAGGTGATTAGAGCAAATGGCTCA
species | Zea mays |
transcript | GRMZM2G018946_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTAEST: gi|78082630|gb|DV511040.1|DV511040
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTAEST: gi|78074317|gb|DV502751.1|DV502751
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
aaaaaataccagctacttacaactagtacttaaatcattgtaattttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTATTTGCATTTGGAAAATGTACGGCAAAAGGTGATTAGAGCAAATGGCTCA
tacttac putative branch site (score: 1)
ttttgttt putative PPT
ttaaatcattgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttatttctattctgtaagtaccaaaacttctaccacttcttaaaaaataccagctacttacaactagtacttaaatcattgtaattttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTATTTGCATTTGGAAAATGTACGGCAAAAGGTGATTAGAGCAAATGGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA