1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA
species | Zea mays |
transcript | GRMZM2G018447_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211424415|gb|FL084950.1|FL084950
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCEST: gi|76018971|gb|DT946141.1|DT946141
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTC
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|18163874|gb|BM333713.1|BM333713
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211421813|gb|FL084940.1|FL084940
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGNCTAGTTCGCCAGCAAAG CAACGTNCAGTGGGACAATGACCGCTATGTCAGGAACTGCCGCEST: gi|32856121|gb|CD995802.1|CD995802
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGG-ACAATGACCGCTATGTCAGGAACTGCCGC
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211421814|gb|FL084941.1|FL084941
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|89756005|gb|DY686208.1|DY686208
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211421803|gb|FL084930.1|FL084930
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|29946440|gb|CB816151.1|CB816151
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GTCTATGTTGTCTAGTTCGCCAGCAAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGEST: gi|67016859|gb|CO445608.1|CO445608
genomic: GTCTATGTTGTCTAGTTCGCCAGC-AAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|84976679|gb|DW475101.1|DW475101
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|18166490|gb|BM336329.1|BM336329
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|89246821|gb|DY618608.1|DY618608
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211424412|gb|FL084947.1|FL084947
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTAYCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211421809|gb|FL084936.1|FL084936
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|116823841|gb|EC867418.1|EC867418
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: TATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTC---AACTGCCGNNCAACGGGAEST: gi|16920438|gb|BM074657.1|BM074657
genomic: TATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCG--CAACGGGA
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|76288121|gb|DV027689.1|DV027689
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|60394784|gb|DN227654.1|DN227654
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|32935782|gb|CF040594.1|CF040594
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGCATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|76018970|gb|DT946140.1|DT946140
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|18172273|gb|BM347661.1|BM347661
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211424418|gb|FL084953.1|FL084953
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|29947193|gb|CB816528.1|CB816528
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|17929384|gb|BM266344.1|BM266344
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|76288120|gb|DV027688.1|DV027688
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211421806|gb|FL084933.1|FL084933
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211421802|gb|FL084929.1|FL084929
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTEST: gi|18163588|gb|BM333427.1|BM333427
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGT
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGEST: gi|211424411|gb|FL084946.1|FL084946
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACEST: gi|211421808|gb|FL084935.1|FL084935
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAAC
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGEST: gi|18169036|gb|BM338876.1|BM338876
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
cagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA
agctaac putative branch site (score: 425)
ataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG