1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catccatatctatattttagttatcagttggagaactttggctgttctgctttccttcttttttttgtgatgtattaacaataaatgtttttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGG
species | Zea mays |
transcript | GRMZM2G017853_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTCCTAEST: gi|74233404|gb|DT641318.1|DT641318
genomic: AGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|76927172|gb|DV171164.1|DV171164
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTTTAEST: gi|71310881|gb|DR791743.1|DR791743
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|78089273|gb|DV517647.1|DV517647
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
tctgctttccttcttttttttgtgatgtattaacaataaatgtttttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGG
tattaac putative branch site (score: 27)
tgttttttttt putative PPT
ttttttttgtgatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catccatatctatattttagttatcagttggagaactttggctgttctgctttccttcttttttttgtgatgtattaacaataaatgtttttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
catccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa